CAZyme3D

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Entry ID

Information for CAZyme ID: APA06410.1

Basic Information

GenBank IDAPA06410.1
FamilyGH17
Sequence Length295
UniProt IDA0A1D9PUR4(100,100)Download
Average pLDDT?94.00
CAZy50 ID157851
CAZy50 RepYes, APA06410.1
Structure ClusterSC_GH17_clus20
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID665079
KingdomEukaryota
PhylumAscomycota
ClassLeotiomycetes
OrderHelotiales
FamilySclerotiniaceae
GenusSclerotinia
SpeciesSclerotinia sclerotiorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTTSIALAL  ASTLTGANAY  WKGFNSQATL  GNGACKTQAD  WENDFRMIQS  FPGGFNSLRV60
YASSDCNTIA  NVVPAAIATG  GKVLVGVWTE  DAGHYDAEKQ  ALLAATRTYG  FDWMVAVSVG120
SEDLYRGDTD  AFTLSQQIYD  VRGMLSTVPG  YTTTGVQVGH  VDTWTMWTNG  ANVDVIKACD180
FIGLDGYPYF  QNTEENDIGV  ADDLFWQSVN  AVRGAVQNVG  SNAPVWVTET  GWPTAGATEN240
VAVASVENAQ  TYWKQVACSA  VNEVNTFWYS  LQDFNAIPAF  GVVDGNGNLK  YDLSC295

Predicted 3D structure by AlphaFold2 with pLDDT = 94.00 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKTTSIALAL  ASTLTGANAY  WKGFNSQATL  GNGACKTQAD  WENDFRMIQS  FPGGFNSLRV60
YASSDCNTIA  NVVPAAIATG  GKVLVGVWTE  DAGHYDAEKQ  ALLAATRTYG  FDWMVAVSVG120
SEDLYRGDTD  AFTLSQQIYD  VRGMLSTVPG  YTTTGVQVGH  VDTWTMWTNG  ANVDVIKACD180
FIGLDGYPYF  QNTEENDIGV  ADDLFWQSVN  AVRGAVQNVG  SNAPVWVTET  GWPTAGATEN240
VAVASVENAQ  TYWKQVACSA  VNEVNTFWYS  LQDFNAIPAF  GVVDGNGNLK  YDLSC295

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH17(55-295)

MKTTSIALAL  ASTLTGANAY  WKGFNSQATL  GNGACKTQAD  WENDFRMIQS  FPGGFNSLRV60
YASSDCNTIA  NVVPAAIATG  GKVLVGVWTE  DAGHYDAEKQ  ALLAATRTYG  FDWMVAVSVG120
SEDLYRGDTD  AFTLSQQIYD  VRGMLSTVPG  YTTTGVQVGH  VDTWTMWTNG  ANVDVIKACD180
FIGLDGYPYF  QNTEENDIGV  ADDLFWQSVN  AVRGAVQNVG  SNAPVWVTET  GWPTAGATEN240
VAVASVENAQ  TYWKQVACSA  VNEVNTFWYS  LQDFNAIPAF  GVVDGNGNLK  YDLSC295

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help