CAZyme3D

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Entry ID

Information for CAZyme ID: AOV94588.1

Basic Information

GenBank IDAOV94588.1
FamilyGT4
Sequence Length381
UniProt IDA0A1D8MRF6(100,100)Download
Average pLDDT?95.57
CAZy50 ID111378
CAZy50 RepYes, AOV94588.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1737403
KingdomArchaea
PhylumEuryarchaeota
ClassCandidatus Nanohaloarchaea
Order
Family
Genus
SpeciesNanohaloarchaea archaeon SG9

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRPLFITWEY  PPYKAGGIAA  HCEDLATTMA  AQGHEPVVIT  YGDERTCEVR  DGVQIQRVPS60
TDFATNTLSW  AMHLGHEMEK  KAIELHKQNN  FDLVHAHDWM  AVSGATGIKK  TLDLPMVFTV120
HSTQKGRDGI  GSEYQKTIHD  LEWYGTYEAD  EVITVGREFS  EEVKHTYEVP  ENKINYIPNG180
VDLERFDSHS  KDLNRRNYAL  DWENIVLFVG  RMYPQKGPGH  LIEAMPHILD  QQPEAKFVMC240
GSGATEHYKS  IAKSQVGDKV  HFPGYVSDNE  LMSLMKEAAM  TVAPSVYEPF  GIVPLEAAAS300
ETMTVGSYTG  GMKDTIVHEY  TGLHTYPADP  GSITDQVSRG  LEDPGWADWM  GDNARERVED360
NFRWEQISAW  TTGIYNQALE  E381

Predicted 3D structure by AlphaFold2 with pLDDT = 95.57 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRPLFITWEY  PPYKAGGIAA  HCEDLATTMA  AQGHEPVVIT  YGDERTCEVR  DGVQIQRVPS60
TDFATNTLSW  AMHLGHEMEK  KAIELHKQNN  FDLVHAHDWM  AVSGATGIKK  TLDLPMVFTV120
HSTQKGRDGI  GSEYQKTIHD  LEWYGTYEAD  EVITVGREFS  EEVKHTYEVP  ENKINYIPNG180
VDLERFDSHS  KDLNRRNYAL  DWENIVLFVG  RMYPQKGPGH  LIEAMPHILD  QQPEAKFVMC240
GSGATEHYKS  IAKSQVGDKV  HFPGYVSDNE  LMSLMKEAAM  TVAPSVYEPF  GIVPLEAAAS300
ETMTVGSYTG  GMKDTIVHEY  TGLHTYPADP  GSITDQVSRG  LEDPGWADWM  GDNARERVED360
NFRWEQISAW  TTGIYNQALE  E381

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(203-350)

MRPLFITWEY  PPYKAGGIAA  HCEDLATTMA  AQGHEPVVIT  YGDERTCEVR  DGVQIQRVPS60
TDFATNTLSW  AMHLGHEMEK  KAIELHKQNN  FDLVHAHDWM  AVSGATGIKK  TLDLPMVFTV120
HSTQKGRDGI  GSEYQKTIHD  LEWYGTYEAD  EVITVGREFS  EEVKHTYEVP  ENKINYIPNG180
VDLERFDSHS  KDLNRRNYAL  DWENIVLFVG  RMYPQKGPGH  LIEAMPHILD  QQPEAKFVMC240
GSGATEHYKS  IAKSQVGDKV  HFPGYVSDNE  LMSLMKEAAM  TVAPSVYEPF  GIVPLEAAAS300
ETMTVGSYTG  GMKDTIVHEY  TGLHTYPADP  GSITDQVSRG  LEDPGWADWM  GDNARERVED360
NFRWEQISAW  TTGIYNQALE  E381

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help