Information for CAZyme ID: AOT20184.1
Basic Information
| GenBank ID | AOT20184.1 |
| Family | CBM5 |
| Sequence Length | 923 |
| UniProt ID | A0A0F6ACP3(100,100) |
| Average pLDDT? | 84.37 |
| CAZy50 ID | 18060 |
| CAZy50 Rep | Yes, AOT20184.1 |
| Structure Cluster | SC_CBM5_clus30, SC_CBM5_clus5 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 43657 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Alteromonadales |
| Family | Pseudoalteromonadaceae |
| Genus | Pseudoalteromonas |
| Species | Pseudoalteromonas luteoviolacea |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLKAKKIALL VAASVGVFST FAALASEPVS LHNNEQLKAN IKSQLSQHQS FFRAASSDDQ | 60 |
| QDLEFITHQA TQDGRHMRRS QYYKGVRVYG GEIVTHHNEQ NFLSVWFQPE GEITSISGSV | 120 |
| VPNISLATVK ASISDKQAIE FAKEQIAELL ATSDEQVELV IYPHHGKAKL AYLVTLFAET | 180 |
| EHAPMRPEFA IDAHTGVVLS RIDTLNHSKI GMGPGGNEKI GKHYYGDDMP KFHAKELNNG | 240 |
| NCEMSHTDIR VIDMEHGTTN TQTYQFPCHE NTHKHVNGAY SPLNDAMFYG QATIDMFNDW | 300 |
| FDSRALSGDL VMRIHYRKDY LNAFWNGKEV TFGDGDLDNY GVYPFTSLGV VAHEIGHGVT | 360 |
| HQNSKLVYSN MSGGVNESFS DMTSEALECF MNQKPDGTCE VDWLIGASIF KNRTALRYME | 420 |
| NPERDGRSIG HASKFEIGMG VHHSSGVFNR AFYLLANSEG WGVKKAYEVM LHANKNFWVY | 480 |
| NGKFESLACG VTDAAADLGY DTKAVGEAFK AVGVFACTEN KAPTISLTSP DSNGRYLIGS | 540 |
| DVTFKADAKD EYGAVEKVEF FVNGVLYNTD LQAPFETQFN TDKTGVYTVT AKVTDDEGLS | 600 |
| TDAAPVSFSL IDPSQCQTAP WQGGKVYTQG NKVAFDGFEY EAKWWNRDQS PASNSGSWGV | 660 |
| WKKGLECGGV ADKPNQAPSL SVTSPSSNVA IELGESVSVR FAANDSDGEI AKVAVSVNGQ | 720 |
| ALTELTRTPY AFNYQPLEVG TYQLSAVAYD NDEAQSTTVS RTITVTNAEP QPTPEAPSVR | 780 |
| LTSPANGSTF NVGEQVALSV VASDKDNDLK QITYFVNGKQ VAVSSVAPYS ANFKTTSAGS | 840 |
| YSVFAIATDA QGLSTQSSTN RFKVNGSKPS CDVPAWQASS VYTSGKQASL DGQLYQAKWW | 900 |
| TRNQNPAQYS SRWAVWKHLG ECK | 923 |
Predicted 3D structure by AlphaFold2 with pLDDT = 84.37 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MLKAKKIALL VAASVGVFST FAALASEPVS LHNNEQLKAN IKSQLSQHQS FFRAASSDDQ | 60 |
| QDLEFITHQA TQDGRHMRRS QYYKGVRVYG GEIVTHHNEQ NFLSVWFQPE GEITSISGSV | 120 |
| VPNISLATVK ASISDKQAIE FAKEQIAELL ATSDEQVELV IYPHHGKAKL AYLVTLFAET | 180 |
| EHAPMRPEFA IDAHTGVVLS RIDTLNHSKI GMGPGGNEKI GKHYYGDDMP KFHAKELNNG | 240 |
| NCEMSHTDIR VIDMEHGTTN TQTYQFPCHE NTHKHVNGAY SPLNDAMFYG QATIDMFNDW | 300 |
| FDSRALSGDL VMRIHYRKDY LNAFWNGKEV TFGDGDLDNY GVYPFTSLGV VAHEIGHGVT | 360 |
| HQNSKLVYSN MSGGVNESFS DMTSEALECF MNQKPDGTCE VDWLIGASIF KNRTALRYME | 420 |
| NPERDGRSIG HASKFEIGMG VHHSSGVFNR AFYLLANSEG WGVKKAYEVM LHANKNFWVY | 480 |
| NGKFESLACG VTDAAADLGY DTKAVGEAFK AVGVFACTEN KAPTISLTSP DSNGRYLIGS | 540 |
| DVTFKADAKD EYGAVEKVEF FVNGVLYNTD LQAPFETQFN TDKTGVYTVT AKVTDDEGLS | 600 |
| TDAAPVSFSL IDPSQCQTAP WQGGKVYTQG NKVAFDGFEY EAKWWNRDQS PASNSGSWGV | 660 |
| WKKGLECGGV ADKPNQAPSL SVTSPSSNVA IELGESVSVR FAANDSDGEI AKVAVSVNGQ | 720 |
| ALTELTRTPY AFNYQPLEVG TYQLSAVAYD NDEAQSTTVS RTITVTNAEP QPTPEAPSVR | 780 |
| LTSPANGSTF NVGEQVALSV VASDKDNDLK QITYFVNGKQ VAVSSVAPYS ANFKTTSAGS | 840 |
| YSVFAIATDA QGLSTQSSTN RFKVNGSKPS CDVPAWQASS VYTSGKQASL DGQLYQAKWW | 900 |
| TRNQNPAQYS SRWAVWKHLG ECK | 923 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.