CAZyme3D

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Entry ID

Information for CAZyme ID: AOS98775.1

Basic Information

GenBank IDAOS98775.1
FamilyGT101
Sequence Length254
UniProt IDAOS98775.1(MOD)Download
Average pLDDT?93.43
CAZy50 ID170763
CAZy50 RepYes, AOS98775.1
Structure ClusterSC_GT101_clus13
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1849031
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
Family
GenusExiguobacterium
SpeciesExiguobacterium sp. U13-1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSRVMIWIKT  AFYFFASFKG  SKKAKYLDFQ  KTVEFIIKDK  ISLIRFGDGE  FNIIGKKDIH60
YQNHSLELEN  ELKGIIENYN  NNNINSNYLL  CMPRYFFESS  GYEIAKKRVF  VSSWSFSRYL120
FNKKFDKNLI  YGDSFVFSKG  NEQIYEKIWS  DQRISNVIFV  HNKIEYGEKF  ALKYSKNVTN180
IEIPDSNAFE  YKDEIINDIY  KNLQGNKEIL  VIISAGPLGK  VLVKELSEDD  IWAIDTGHCW240
DDPLISVNKN  CEVS254

Predicted 3D structure by AlphaFold2 with pLDDT = 93.43 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSRVMIWIKT  AFYFFASFKG  SKKAKYLDFQ  KTVEFIIKDK  ISLIRFGDGE  FNIIGKKDIH60
YQNHSLELEN  ELKGIIENYN  NNNINSNYLL  CMPRYFFESS  GYEIAKKRVF  VSSWSFSRYL120
FNKKFDKNLI  YGDSFVFSKG  NEQIYEKIWS  DQRISNVIFV  HNKIEYGEKF  ALKYSKNVTN180
IEIPDSNAFE  YKDEIINDIY  KNLQGNKEIL  VIISAGPLGK  VLVKELSEDD  IWAIDTGHCW240
DDPLISVNKN  CEVS254

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT101(44-239)

MSRVMIWIKT  AFYFFASFKG  SKKAKYLDFQ  KTVEFIIKDK  ISLIRFGDGE  FNIIGKKDIH60
YQNHSLELEN  ELKGIIENYN  NNNINSNYLL  CMPRYFFESS  GYEIAKKRVF  VSSWSFSRYL120
FNKKFDKNLI  YGDSFVFSKG  NEQIYEKIWS  DQRISNVIFV  HNKIEYGEKF  ALKYSKNVTN180
IEIPDSNAFE  YKDEIINDIY  KNLQGNKEIL  VIISAGPLGK  VLVKELSEDD  IWAIDTGHCW240
DDPLISVNKN  CEVS254

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help