CAZyme3D

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Entry ID

Information for CAZyme ID: AOR94461.1

Basic Information

GenBank IDAOR94461.1
FamilyCBM61, GH53
Sequence Length1248
UniProt IDA0A7G5NWU2(99.5,87.5)Download
Average pLDDT?82.40
CAZy50 ID6972
CAZy50 RepYes, AOR94461.1
Structure ClusterSC_CBM61_clus3, SC_GH53_clus25
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1492
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium butyricum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKNITKNTS  ILTLLMYLIA  SNGVQAIVDD  DSINNSQEQT  EKVINENYFI  DNNEDEPSEN60
KKGTFYNSDE  NNVLLNSKNK  EDISNYMQTK  VTTESQVIAN  EDSTDNYVLN  GDFTNGINNW120
TINGETSSAN  VKWIDDEYEY  GLNYWMDQKL  DNDQKPTMFN  IDTYQTLVGL  EKGSYELSFY180
VNSGEFNELY  AYVKDGELVT  KKEISPSGNM  TKVTLQFQAK  SNNLTIGFYG  KGASGLSWAN240
FDNVEINKAE  VIDNTGKIIN  PDFEYNLDGW  ETTGTSSIVK  WNGDWGNSNT  KGSLNYGWYD300
GDGEYETDTH  QTITGLENGT  YTVKAYAQSS  GEQKELYFYA  KGFDKDNKEK  IVRENITDAH360
NFRITLLEVE  VTNGQMTIGF  HAKGGKEEWA  NFDEITISKK  SEDKRKSLDV  IENFTFEDGL420
KGWNVIGNKD  SVQALKGSGY  NDSSYLKFED  SKSYEGKVEQ  TITGLENGHY  KLEFYAKSNG480
GQQNIYGYVK  DTGKSEARTS  VPVDNNYRKV  VVDFEVLDGQ  ATIGFYSKSS  NYSWSIIDNV540
KLYKINEGYT  MLKGGDLTEL  NYVESTGAVF  YDQDGNPRDP  FHILAENGFN  FARLRIYNKT600
GRDSSHKYED  GSEFYLPDGY  QNKEDMLKLA  KRAKDVNMQI  ELTLHYSDWW  TNGLVHDIPV660
EWEEAIKGLD  EEEAVSKLEG  FVYDFTYDVM  KSLKDQGTLP  EYISLGNEMQ  GGLLYPFGKV720
DNMETLAKFL  NAGAKAVRDV  SNTTKIILHL  DEAGDNNRYY  KLLDGCEEYN  VDYDIIGPSY780
YPYWTRNSVE  QIIPWCNDLY  AKYGKKIIFM  ETGYNWNPTV  PDGSKPGQLV  DNGNESHAST840
PQGQKEFMDE  LFNGMRNADD  NCIVGDLYWD  PIMINHEGIG  WAIAKGAADD  GSEDIVDENV900
VSNTTLFDFN  GKALKSLNSY  KDNTEGTNYG  MISGIITDSK  GNIIDNAEVT  VSINGDIYKR960
TSDKYGRFFI  NNLKETDDGT  IVVTRTGYIS  ANDKFKIKSG  EISSIELSLK  KKSSSSSGGS1020
SSGNSDSSTI  QDNSVDSSNT  LSNNITESEG  KIVINENGNK  EIWINGEKKV  NAWVEIDGKW1080
YRTGEAGEVI  KGWIKDNDSW  YYLNNEGDMR  TGWLNDNNKW  YYLNKTGNMN  TGWLNDNNKW1140
YYLNKTGNMN  TGWFKEDEKW  YYLNESGEMK  TGWLNKNDKW  YYLGEAGDMR  TGWVKDGSLW1200
CYLNDDGSMK  TGWINSNDNW  YYLDESGKMI  IDSIIDGYKI  NSQGELFN1248

Predicted 3D structure by AlphaFold2 with pLDDT = 82.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKKNITKNTS  ILTLLMYLIA  SNGVQAIVDD  DSINNSQEQT  EKVINENYFI  DNNEDEPSEN60
KKGTFYNSDE  NNVLLNSKNK  EDISNYMQTK  VTTESQVIAN  EDSTDNYVLN  GDFTNGINNW120
TINGETSSAN  VKWIDDEYEY  GLNYWMDQKL  DNDQKPTMFN  IDTYQTLVGL  EKGSYELSFY180
VNSGEFNELY  AYVKDGELVT  KKEISPSGNM  TKVTLQFQAK  SNNLTIGFYG  KGASGLSWAN240
FDNVEINKAE  VIDNTGKIIN  PDFEYNLDGW  ETTGTSSIVK  WNGDWGNSNT  KGSLNYGWYD300
GDGEYETDTH  QTITGLENGT  YTVKAYAQSS  GEQKELYFYA  KGFDKDNKEK  IVRENITDAH360
NFRITLLEVE  VTNGQMTIGF  HAKGGKEEWA  NFDEITISKK  SEDKRKSLDV  IENFTFEDGL420
KGWNVIGNKD  SVQALKGSGY  NDSSYLKFED  SKSYEGKVEQ  TITGLENGHY  KLEFYAKSNG480
GQQNIYGYVK  DTGKSEARTS  VPVDNNYRKV  VVDFEVLDGQ  ATIGFYSKSS  NYSWSIIDNV540
KLYKINEGYT  MLKGGDLTEL  NYVESTGAVF  YDQDGNPRDP  FHILAENGFN  FARLRIYNKT600
GRDSSHKYED  GSEFYLPDGY  QNKEDMLKLA  KRAKDVNMQI  ELTLHYSDWW  TNGLVHDIPV660
EWEEAIKGLD  EEEAVSKLEG  FVYDFTYDVM  KSLKDQGTLP  EYISLGNEMQ  GGLLYPFGKV720
DNMETLAKFL  NAGAKAVRDV  SNTTKIILHL  DEAGDNNRYY  KLLDGCEEYN  VDYDIIGPSY780
YPYWTRNSVE  QIIPWCNDLY  AKYGKKIIFM  ETGYNWNPTV  PDGSKPGQLV  DNGNESHAST840
PQGQKEFMDE  LFNGMRNADD  NCIVGDLYWD  PIMINHEGIG  WAIAKGAADD  GSEDIVDENV900
VSNTTLFDFN  GKALKSLNSY  KDNTEGTNYG  MISGIITDSK  GNIIDNAEVT  VSINGDIYKR960
TSDKYGRFFI  NNLKETDDGT  IVVTRTGYIS  ANDKFKIKSG  EISSIELSLK  KKSSSSSGGS1020
SSGNSDSSTI  QDNSVDSSNT  LSNNITESEG  KIVINENGNK  EIWINGEKKV  NAWVEIDGKW1080
YRTGEAGEVI  KGWIKDNDSW  YYLNNEGDMR  TGWLNDNNKW  YYLNKTGNMN  TGWLNDNNKW1140
YYLNKTGNMN  TGWFKEDEKW  YYLNESGEMK  TGWLNKNDKW  YYLGEAGDMR  TGWVKDGSLW1200
CYLNDDGSMK  TGWINSNDNW  YYLDESGKMI  IDSIIDGYKI  NSQGELFN1248

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM61(106-245)+CBM61(258-396)+CBM61(410-542)+GH53(553-918)

MKKNITKNTS  ILTLLMYLIA  SNGVQAIVDD  DSINNSQEQT  EKVINENYFI  DNNEDEPSEN60
KKGTFYNSDE  NNVLLNSKNK  EDISNYMQTK  VTTESQVIAN  EDSTDNYVLN  GDFTNGINNW120
TINGETSSAN  VKWIDDEYEY  GLNYWMDQKL  DNDQKPTMFN  IDTYQTLVGL  EKGSYELSFY180
VNSGEFNELY  VYVKDGELVT  KKEISPSGNM  TKVTLQFQAK  SNNLTIGFYG  KGASGLSWAN240
FDNVEINKAE  VIDNTGKIIN  PDFEYNLDGW  ETTGTSSIVK  WNGDWGNSNT  KGCLNYGWYD300
GDGEYETDTH  QTITGLENGT  YTVKAYAQSS  GEQKELYFYA  KGFDKDNKEK  IVRENITDAH360
NFRITLLEVE  VTNGQMTIGF  HAKGGKEEWA  NFDEITISKK  SEDKRKSLDV  IENFTFEDGL420
KGWNVIGNKD  SVQALKGSGY  NDSSYLKFED  SKSYEGKVEQ  TITGLENGHY  KLEFYAKSNG480
GQQNIYGYVK  DTGKSEARTS  VPVDNNYRKV  VVDFEVLDGQ  ATIGFYSKSS  NYSWSIIDNV540
KLYKVNEGYT  MLKGGDLTEL  NYVESTGAVF  YDQDGNPRDP  FHILAENGFN  FARLRIYNKT600
GRDSSHKYED  GSEFYLPDGY  QNKEDMLKLA  KRAKDVNMQI  ELTLHYSDWW  TNGLVHDIPV660
EWEEAIKGLD  EEEAVSKLEG  FVYDFTYDVM  KSLKDQGTLP  EYISLGNEMQ  GGLLYPFGKV720
DNMETLAKFL  NAGAKAVRDV  SDTTKIILHL  DEAGDNNRYY  KLLDGCEKYN  VDYDIIGPSY780
YPYWTRNSVE  QIIPWCNDLY  AKYGKKIIFM  ETGYNWNPTV  PDGSKPGQLV  DNGNESHAST840
PQGQKEFMDE  LFNGMRNADD  NCIVGDLYWD  PIMINHEGIG  WAIAKGAADD  GSEDIVDENV900
VSNTTLFDFN  GKALKSLNSY  KDNTEGTNYG  MISGIITDSK  GNIIDNAEVT  VSINGDIYKR960
TSDKYGRFFI  NNLKETDDGT  IVVTRTGYIS  ANDKFKIKSG  EISSIELSLK  KKSSSSSGGS1020
SSGNSDSSTI  QDNSVDSSNT  LSNNITESEG  KIVINENGNK  EIWINGEKKV  NAWVEIDGKW1080
YRTGEAGEVI  KGWIKDNDSW  YYLNNEGDMR  TGWLNDNNKW  YYLNKTGNMN  TGWFKEDEKW1140
YYLNESGEMK  TGWLNKNDKW  YYLGEAGDMR  TGWVKDGSLW  YYLNDDGSMK  TGWINSNDNW1200
YYLDESGKMI  IDSIIDGYKI  NSQGELFN1228

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help