CAZyme3D

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Entry ID

Information for CAZyme ID: AOR25445.1

Basic Information

GenBank IDAOR25445.1
FamilyGH50
Sequence Length671
UniProt IDA0A1D7XQ45(100,100)Download
Average pLDDT?90.50
CAZy50 ID42291
CAZy50 RepYes, AOR25445.1
Structure ClusterSC_GH50_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1336795
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusFormosa
SpeciesFormosa sp. Hel3_A1_48

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFSIGAFNFN  LFAQVYQSCD  ENQIIRIVND  KISERNYEFS  WDFKDCPLDF  SSHRFIGFNI60
ENNSSSKIIL  DISHDPKPHL  ENSARFIIAP  NQFKTCEMMI  TRQKPNQEDT  WKSHFEKVRG120
YPGGYVTHWA  APSSSKIEKL  FVKISLSKPL  EEGDFIGFNH  PFGIGELEYD  SNTLSKLSYP180
ILDKMGQFNA  EKWRGKLHSI  DTLEFLGNQD  YKDFHGISFN  SNLSKYGGWK  NGPKQEAKGF240
FYTKKFDGKW  WFVDPDGYLF  WSLGITGIGG  GSATKTTSRE  VLFSDLSLER  LSVKKYQDSM300
TLAASYHKRQ  AKEYLIFKPD  KINFYYLNLK  RKYGENWIQK  HQDVTAGRLK  NWGVNTYGAW360
SKKSDFIEHP  YTIIIHPKLQ  GIGKIDKLPD  PFSSEFSSAL  KKSLQRIAHK  NSDPWLLGVF420
VNNEIHWEHK  FSLMDEILSL  KNKKPARKAF  EKFLKKKYGS  INSLNSVWAS  NFTSFNNISG480
DNKTMFSSKF  MADLELFFSY  FADTYYNIVS  TEFKKIFPNH  LYLGSRLYGK  SKFNKNLHEI540
AAQYCDVVSF  NIYDYGVKDF  KLLSKIDKPM  LIGEFHFGTA  SHGVWGSGLR  NASSLENQAN600
LYMQYIEEAC  QHTQFIGAHW  FQWSDQPTTG  RSDGENFRIG  VVSITDQPYS  ELVEAIKKVS660
KTLYVKRKNK  L671

Predicted 3D structure by AlphaFold2 with pLDDT = 90.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MFSIGAFNFN  LFAQVYQSCD  ENQIIRIVND  KISERNYEFS  WDFKDCPLDF  SSHRFIGFNI60
ENNSSSKIIL  DISHDPKPHL  ENSARFIIAP  NQFKTCEMMI  TRQKPNQEDT  WKSHFEKVRG120
YPGGYVTHWA  APSSSKIEKL  FVKISLSKPL  EEGDFIGFNH  PFGIGELEYD  SNTLSKLSYP180
ILDKMGQFNA  EKWRGKLHSI  DTLEFLGNQD  YKDFHGISFN  SNLSKYGGWK  NGPKQEAKGF240
FYTKKFDGKW  WFVDPDGYLF  WSLGITGIGG  GSATKTTSRE  VLFSDLSLER  LSVKKYQDSM300
TLAASYHKRQ  AKEYLIFKPD  KINFYYLNLK  RKYGENWIQK  HQDVTAGRLK  NWGVNTYGAW360
SKKSDFIEHP  YTIIIHPKLQ  GIGKIDKLPD  PFSSEFSSAL  KKSLQRIAHK  NSDPWLLGVF420
VNNEIHWEHK  FSLMDEILSL  KNKKPARKAF  EKFLKKKYGS  INSLNSVWAS  NFTSFNNISG480
DNKTMFSSKF  MADLELFFSY  FADTYYNIVS  TEFKKIFPNH  LYLGSRLYGK  SKFNKNLHEI540
AAQYCDVVSF  NIYDYGVKDF  KLLSKIDKPM  LIGEFHFGTA  SHGVWGSGLR  NASSLENQAN600
LYMQYIEEAC  QHTQFIGAHW  FQWSDQPTTG  RSDGENFRIG  VVSITDQPYS  ELVEAIKKVS660
KTLYVKRKNK  L671

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(177-664)

MFSIGAFNFN  LFAQVYQSCD  ENQIIRIVND  KISERNYEFS  WDFKDCPLDF  SSHRFIGFNI60
ENNSSSKIIL  DISHDPKPHL  ENSARFIIAP  NQFKTCEMMI  TRQKPNQEDT  WKSHFEKVRG120
YPGGYVTHWA  APSSSKIEKL  FVKISLSKPL  EEGDFIGFNH  PFGIGELEYD  SNTLSKLSYP180
ILDKMGQFNA  EKWRGKLHSI  DTLEFLGNQD  YKDFHGISFN  SNLSKYGGWK  NGPKQEAKGF240
FYTKKFDGKW  WFVDPDGYLF  WSLGITGIGG  GSATKTTSRE  VLFSDLSLER  LSVKKYQDSM300
TLAASYHKRQ  AKEYLIFKPD  KINFYYLNLK  RKYGENWIQK  HQDVTAGRLK  NWGVNTYGAW360
SKKSDFIEHP  YTIIIHPKLQ  GIGKIDKLPD  PFSSEFSSAL  KKSLQRIAHK  NSDPWLLGVF420
VNNEIHWEHK  FSLMDEILSL  KNKKPARKAF  EKFLKKKYGS  INSLNSVWAS  NFTSFNNISG480
DNKTMFSSKF  MADLELFFSY  FADTYYNIVS  TEFKKIFPNH  LYLGSRLYGK  SKFNKNLHEI540
AAQYCDVVSF  NIYDYGVKDF  KLLSKIDKPM  LIGEFHFGTA  SHGVWGSGLR  NASSLENQAN600
LYMQYIEEAC  QHTQFIGAHW  FQWSDQPTTG  RSDGENFRIG  VVSITDQPYS  ELVEAIKKVS660
KTLYVKRKNK  L671

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help