CAZyme3D

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Entry ID

Information for CAZyme ID: AOH83126.1

Basic Information

GenBank IDAOH83126.1
FamilyCBM35, GH39
Sequence Length880
UniProt IDA0A1B3Z6S7(100,100)Download
Average pLDDT?92.64
CAZy50 ID20726
CAZy50 RepYes, AOH83126.1
Structure ClusterSC_CBM35_clus47, SC_GH39_clus109
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1560345
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTSHPGTAA  KLLVAVLLGS  CALPAVAQTP  PERLTVDLGS  DTGPFHGGAS  GTLYGLYDAR60
LPHPNLIEGI  ALRTVSTKAQ  DGPQHPGADA  LEVSTLLTDA  SGGDTFIYMT  DITREFPYNW120
KTGDCAQSVT  AYLEKLRKQA  EQVRGMPARY  RDHIVFAPFN  EPEGNMFGDG  PKSCNGVKWQ180
TNPAVFFDAW  DRAYRLIRQM  LPTARIAGPN  TSILFDEVEG  FLKHTVTQGT  VPDVVTWHEL240
SNPATVRTSV  RRYRGWEDTV  FAGTRWQGRH  LPININEYAY  NYHTSVPGQM  VQWIAAIEDS300
KIDADIAYWN  IDGNLSDSAV  QANRGNGQWW  LLNSYATMSG  HSLAVTPPHP  DQSYTLQGVA360
TLDPARRQMR  LLFGGRTGAA  SVALARVPAW  FGATARVRVR  EIGWTGQLGD  STPPTLVADQ420
AVTVRDGTVA  LAFGDGSLPA  LREEAAYEVV  LTPAGADVPA  GAPMAQWRQD  YEAEAAVRRG480
AGLKVRGPEG  SPEAVDRFYT  SGGYSVEGFA  TGSDAALDVA  VDVPADGRYA  VRVLASTFNK540
DPKAEAQGPT  NVFLRIDGKT  ASETELFLPL  GYKPAVLDHV  DTVVPLARGR  HVLTLATRSL600
DGRRRTIGNA  LVDRITLSPA  PAAAQPAIYD  AADAMTKDGR  TIFWVYAAHD  GLARLTLEDG660
AGSAVLHVNG  RDLAAGTAAD  AFLLAGINKV  AVSGATRLRR  LRVADLPAGS  GRTYEAEAAQ720
VAGTARIAAA  SLASGGRAVF  DIGGAPGNGN  TLTFPAVTVA  RAGDYALTIR  FSNDEQSKAT780
HYNPDPLARV  ARIAVNGAAP  LLATFPNSFH  RNNWWEMTVP  VTLRAGANTI  RIAGEEQPDW840
DGKTYASQAW  SQVLLRSKYA  PNIDRITVTP  LPGTAATTAK  880

Predicted 3D structure by AlphaFold2 with pLDDT = 92.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRTSHPGTAA  KLLVAVLLGS  CALPAVAQTP  PERLTVDLGS  DTGPFHGGAS  GTLYGLYDAR60
LPHPNLIEGI  ALRTVSTKAQ  DGPQHPGADA  LEVSTLLTDA  SGGDTFIYMT  DITREFPYNW120
KTGDCAQSVT  AYLEKLRKQA  EQVRGMPARY  RDHIVFAPFN  EPEGNMFGDG  PKSCNGVKWQ180
TNPAVFFDAW  DRAYRLIRQM  LPTARIAGPN  TSILFDEVEG  FLKHTVTQGT  VPDVVTWHEL240
SNPATVRTSV  RRYRGWEDTV  FAGTRWQGRH  LPININEYAY  NYHTSVPGQM  VQWIAAIEDS300
KIDADIAYWN  IDGNLSDSAV  QANRGNGQWW  LLNSYATMSG  HSLAVTPPHP  DQSYTLQGVA360
TLDPARRQMR  LLFGGRTGAA  SVALARVPAW  FGATARVRVR  EIGWTGQLGD  STPPTLVADQ420
AVTVRDGTVA  LAFGDGSLPA  LREEAAYEVV  LTPAGADVPA  GAPMAQWRQD  YEAEAAVRRG480
AGLKVRGPEG  SPEAVDRFYT  SGGYSVEGFA  TGSDAALDVA  VDVPADGRYA  VRVLASTFNK540
DPKAEAQGPT  NVFLRIDGKT  ASETELFLPL  GYKPAVLDHV  DTVVPLARGR  HVLTLATRSL600
DGRRRTIGNA  LVDRITLSPA  PAAAQPAIYD  AADAMTKDGR  TIFWVYAAHD  GLARLTLEDG660
AGSAVLHVNG  RDLAAGTAAD  AFLLAGINKV  AVSGATRLRR  LRVADLPAGS  GRTYEAEAAQ720
VAGTARIAAA  SLASGGRAVF  DIGGAPGNGN  TLTFPAVTVA  RAGDYALTIR  FSNDEQSKAT780
HYNPDPLARV  ARIAVNGAAP  LLATFPNSFH  RNNWWEMTVP  VTLRAGANTI  RIAGEEQPDW840
DGKTYASQAW  SQVLLRSKYA  PNIDRITVTP  LPGTAATTAK  880

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(497-617)+CBM35(714-833)

MRTSHPGTAA  KLLVAVLLGS  CALPAVAQTP  PERLTVDLGS  DTGPFHGGAS  GTLYGLYDAR60
LPHPNLIEGI  ALRTVSTKAQ  DGPQHPGADA  LEVSTLLTDA  SGGDTFIYMT  DITREFPYNW120
KTGDCAQSVT  AYLEKLRKQA  EQVRGMPARY  RDHIVFAPFN  EPEGNMFGDG  PKSCNGVKWQ180
TNPAVFFDAW  DRAYRLIRQM  LPTARIAGPN  TSILFDEVEG  FLKHTVTQGT  VPDVVTWHEL240
SNPATVRTSV  RRYRGWEDTV  FAGTRWQGRH  LPININEYAY  NYHTSVPGQM  VQWIAAIEDS300
KIDADIAYWN  IDGNLSDSAV  QANRGNGQWW  LLNSYATMSG  HSLAVTPPHP  DQSYTLQGVA360
TLDPARRQMR  LLFGGRTGAA  SVALARVPAW  FGATARVRVR  EIGWTGQLGD  STPPTLVADQ420
AVTVRDGTVA  LAFGDGSLPA  LREEAAYEVV  LTPAGADVPA  GAPMAQWRQD  YEAEAAVRRG480
AGLKVRGPEG  SPEAVDRFYT  SGGYSVEGFA  TGSDAALDVA  VDVPADGRYA  VRVLASTFNK540
DPKAEAQGPT  NVFLRIDGKT  ASETELFLPL  GYKPAVLDHV  DTVVPLARGR  HVLTLATRSL600
DGRRRTIGNA  LVDRITLSPA  PAAAQPAIYD  AADAMTKDGR  TIFWVYAAHD  GLARLTLEDG660
AGSAVLHVNG  RDLAAGTAAD  AFLLAGINKV  AVSGATRLRR  LRVADLPAGS  GRTYEAEAAQ720
VAGTARIAAA  SLASGGRAVF  DIGGAPGNGN  TLTFPAVTVA  RAGDYALTIR  FSNDEQSKAT780
HYNPDPLARV  ARIAVNGAAP  LLATFPNSFH  RNNWWEMTVP  VTLRAGANTI  RIAGEEQPDW840
DGKTYASQAW  SQVLLRSKYA  PNIDRITVTP  LPGTAATTAK  880

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help