CAZyme3D

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Entry ID

Information for CAZyme ID: ANZ45907.1

Basic Information

GenBank IDANZ45907.1
FamilyGH18
Sequence Length481
UniProt IDA0A1B2I7J4(100,100)Download
Average pLDDT?88.61
CAZy50 ID72953
CAZy50 RepYes, ANZ45907.1
Structure ClusterSC_GH18_clus404
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1197717
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilySynergistaceae
GenusCloacibacillus
SpeciesCloacibacillus porcorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKCPLVRFLK  VLLLTVLVSV  PFNGAAFAAE  GDEPVEIYFE  SQSGVQPDLL  GTAFFRAGAL60
WVPAEALRLM  GVPLEDGPNN  KGFYIGVTDP  AQRFDSPVLA  QLAGRQIALY  FPSLSVEGVS120
YFNMSGMQNL  TNLDFRRENG  SVVFTPNDSV  RGYVQSGAVE  LPPISGKLTM  TWEHVTLDNP180
NLGAQNAIPG  LDVLSPTWFN  LMDANGGMAN  RASAAYVESA  HRRGYRVWGL  VSNSFNAAMT240
TAFFKNARAM  NLFMARLIIY  AKLYGLDGVN  IDFEGMNEAD  RAQFVRFVAR  ISELLRPEGL300
TLSVDVFIPA  NTKSSRSHDR  GELAKYVDYV  MLMAYDEHWR  TSPRAGSVAS  MPWVTKAVEG360
TLAEGVPPSK  LVLGVPFYMR  RWEETKANGG  VKVKGYTLTM  AEAEELAAKR  GAQMQWLETP420
GQYYFTYVAN  GKVQKVWVEN  AASIERKLSL  VGKYGLAGMA  GWRKGHEKPE  VWDTISSLMG480
K481

Predicted 3D structure by AlphaFold2 with pLDDT = 88.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKCPLVRFLK  VLLLTVLVSV  PFNGAAFAAE  GDEPVEIYFE  SQSGVQPDLL  GTAFFRAGAL60
WVPAEALRLM  GVPLEDGPNN  KGFYIGVTDP  AQRFDSPVLA  QLAGRQIALY  FPSLSVEGVS120
YFNMSGMQNL  TNLDFRRENG  SVVFTPNDSV  RGYVQSGAVE  LPPISGKLTM  TWEHVTLDNP180
NLGAQNAIPG  LDVLSPTWFN  LMDANGGMAN  RASAAYVESA  HRRGYRVWGL  VSNSFNAAMT240
TAFFKNARAM  NLFMARLIIY  AKLYGLDGVN  IDFEGMNEAD  RAQFVRFVAR  ISELLRPEGL300
TLSVDVFIPA  NTKSSRSHDR  GELAKYVDYV  MLMAYDEHWR  TSPRAGSVAS  MPWVTKAVEG360
TLAEGVPPSK  LVLGVPFYMR  RWEETKANGG  VKVKGYTLTM  AEAEELAAKR  GAQMQWLETP420
GQYYFTYVAN  GKVQKVWVEN  AASIERKLSL  VGKYGLAGMA  GWRKGHEKPE  VWDTISSLMG480
K481

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(219-465)

MKCPLVRFLK  VLLLTVLVSV  PFNGAAFAAE  GDEPVEIYFE  SQSGVQPDLL  GTAFFRAGAL60
WVPAEALRLM  GVPLEDGPNN  KGFYIGVTDP  AQRFDSPVLA  QLAGRQIALY  FPSLSVEGVS120
YFNMSGMQNL  TNLDFRRENG  SVVFTPNDSV  RGYVQSGAVE  LPPISGKLTM  TWEHVTLDNP180
NLGAQNAIPG  LDVLSPTWFN  LMDANGGMAN  RASAAYVESA  HRRGYRVWGL  VSNSFNAAMT240
TAFFKNARAM  NLFMARLIIY  AKLYGLDGVN  IDFEGMNEAD  RAQFVRFVAR  ISELLRPEGL300
TLSVDVFIPA  NTKSSRSHDR  GELAKYVDYV  MLMAYDEHWR  TSPRAGSVAS  MPWVTKAVEG360
TLAEGVPPSK  LVLGVPFYMR  RWEETKANGG  VKVKGYTLTM  AEAEELAAKR  GAQMQWLETP420
GQYYFTYVAN  GKVQKVWVEN  AASIERKLSL  VGKYGLAGMA  GWRKGHEKPE  VWDTISSLMG480
K481

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help