CAZyme3D

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Entry ID

Information for CAZyme ID: ANZ44957.1

Basic Information

GenBank IDANZ44957.1
FamilyGH133
Sequence Length659
UniProt IDA0A1B2I4U7(100,100)Download
Average pLDDT?94.26
CAZy50 ID43927
CAZy50 RepYes, ANZ44957.1
Structure ClusterSC_GH133_clus10
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1197717
KingdomBacteria
PhylumSynergistota
ClassSynergistia
OrderSynergistales
FamilySynergistaceae
GenusCloacibacillus
SpeciesCloacibacillus porcorum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYLGKADVNT  YDKGAGREFL  VSNGRGSYGF  STVIGANTRR  EHGLLVVRPE  SERQHSVLVS60
KIEETIFDRN  KKYQLSTNRY  KDLVYPDGYR  YLQEYQGNPF  PSILFVIHSI  LLKKSIFMPH120
GKECTVIKYE  LLAAPDKVRL  DLRPLFAHRL  SDTVCPESGK  SEFSVSSDDA  HSISVKGRGH180
ASCCSATAGT  WSLKPLWFEN  LIYEQDDRPE  SAGVDHLWSP  GFISNEISEG  DVVYVVLSEK240
PQSFTLKELA  AMEKETAERF  ENILEQANIP  ALNSAEQDMI  VSSYHLVDDR  PESIAPIYTG300
YPSVDTKARD  TFISLPGLLL  ATGREEVAAK  TLKYWLEIAE  KNGWVMPEKF  ADDGSCEFGC360
IDNGLWFVYA  ADKYLSHHKE  ASAQDRAAFA  RAIKEIVEKY  ISGAAELDAV  CDANMLLRMT420
SAHPSRYWMN  AVAGDEVVVP  RKGYLVEVNA  LWYNALKCAE  KYALECGCAD  SAKKFGEAAE480
KCAKSFNDTF  WSFDMKGLYD  SVDPETFKND  GTIRPNQILA  ASLPFSPLSP  DAAQNVVRLC540
WNELYTTYGL  RTLDPRHDKF  KGRSEGRLDQ  RLKARYRGMA  WTWLLGQFIT  AYLKNNPSRK600
DLGWVFIRPF  NSHLRHGCLG  GVAELFDGMM  PYRPHGDVLS  AVSLGELLRV  LHENLEAGE659

Predicted 3D structure by AlphaFold2 with pLDDT = 94.26 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MYLGKADVNT  YDKGAGREFL  VSNGRGSYGF  STVIGANTRR  EHGLLVVRPE  SERQHSVLVS60
KIEETIFDRN  KKYQLSTNRY  KDLVYPDGYR  YLQEYQGNPF  PSILFVIHSI  LLKKSIFMPH120
GKECTVIKYE  LLAAPDKVRL  DLRPLFAHRL  SDTVCPESGK  SEFSVSSDDA  HSISVKGRGH180
ASCCSATAGT  WSLKPLWFEN  LIYEQDDRPE  SAGVDHLWSP  GFISNEISEG  DVVYVVLSEK240
PQSFTLKELA  AMEKETAERF  ENILEQANIP  ALNSAEQDMI  VSSYHLVDDR  PESIAPIYTG300
YPSVDTKARD  TFISLPGLLL  ATGREEVAAK  TLKYWLEIAE  KNGWVMPEKF  ADDGSCEFGC360
IDNGLWFVYA  ADKYLSHHKE  ASAQDRAAFA  RAIKEIVEKY  ISGAAELDAV  CDANMLLRMT420
SAHPSRYWMN  AVAGDEVVVP  RKGYLVEVNA  LWYNALKCAE  KYALECGCAD  SAKKFGEAAE480
KCAKSFNDTF  WSFDMKGLYD  SVDPETFKND  GTIRPNQILA  ASLPFSPLSP  DAAQNVVRLC540
WNELYTTYGL  RTLDPRHDKF  KGRSEGRLDQ  RLKARYRGMA  WTWLLGQFIT  AYLKNNPSRK600
DLGWVFIRPF  NSHLRHGCLG  GVAELFDGMM  PYRPHGDVLS  AVSLGELLRV  LHENLEAGE659

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH133(293-649)

MYLGKADVNT  YDKGAGREFL  VSNGRGSYGF  STVIGANTRR  EHGLLVVRPE  SERQHSVLVS60
KIEETIFDRN  KKYQLSTNRY  KDLVYPDGYR  YLQEYQGNPF  PSILFVIHSI  LLKKSIFMPH120
GKECTVIKYE  LLAAPDKVRL  DLRPLFAHRL  SDTVCPESGK  SEFSVSSDDA  HSISVKGRGH180
ASCCSATAGT  WSLKPLWFEN  LIYEQDDRPE  SAGVDHLWSP  GFISNEISEG  DVVYVVLSEK240
PQSFTLKELA  AMEKETAERF  ENILEQANIP  ALNSAEQDMI  VSSYHLVDDR  PESIAPIYTG300
YPSVDTKARD  TFISLPGLLL  ATGREEVAAK  TLKYWLEIAE  KNGWVMPEKF  ADDGSCEFGC360
IDNGLWFVYA  ADKYLSHHKE  ASAQDRAAFA  RAIKEIVEKY  ISGAAELDAV  CDANMLLRMT420
SAHPSRYWMN  AVAGDEVVVP  RKGYLVEVNA  LWYNALKCAE  KYALECGCAD  SAKKFGEAAE480
KCAKSFNDTF  WSFDMKGLYD  SVDPETFKND  GTIRPNQILA  ASLPFSPLSP  DAAQNVVRLC540
WNELYTTYGL  RTLDPRHDKF  KGRSEGRLDQ  RLKARYRGMA  WTWLLGQFIT  AYLKNNPSRK600
DLGWVFIRPF  NSHLRHGCLG  GVAELFDGMM  PYRPHGDVLS  AVSLGELLRV  LHENLEAGE659

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help