CAZyme3D

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Entry ID

Information for CAZyme ID: ANV26606.1

Basic Information

GenBank IDANV26606.1
FamilyGH23
Sequence Length256
UniProt IDA0A7W5Z6T2(99.6,99.2)Download
Average pLDDT?73.64
CAZy50 ID170214
CAZy50 RepYes, ANV26606.1
Structure ClusterSC_GH23_clus128
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1869170
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium sp. S41

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIMNTSCPRP  ATGRCGVHRR  ILLLLLSGLF  SSAIATSPAL  AQTAVPDRGG  AAHPHAAHIT60
EASQRFGIPA  IWIAAVMRAE  SAGDVRAVSS  AGAMGLMQVM  PDTWAELRIR  YRLGRDPYDP120
RDNILAGTAY  LREMWDRYGN  VAAMLAAYNA  GPGRYDQYRL  ADRPLPAETR  AYVASLAPAL180
LGEAPSGSAS  VAPWPLDWRE  AAIFVVREND  ASAADPALPD  RAPNDVPSPL  PATPDALTAF240
QPEGLFVARN  AGGDRP256

Predicted 3D structure by AlphaFold2 with pLDDT = 73.64 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MIMNTSCPRP  ATGRCGVHRR  ILLLLLSGLF  SSAIATSPAL  AQTAVPDRGG  AAHPHAAHIT60
EASQRFGIPA  IWIAAVMRAE  SAGDVRAVSS  AGAMGLMQVM  PDTWAELRIR  YRLGRDPYDP120
RDNILAGTAY  LREMWDRYGN  VAAMLAAYNA  GPGRYDQYRL  ADRPLPAETR  AYVASLAPAL180
LGEAPSGSAS  VAPWPLDWRE  AAIFVVREND  ASAADPALPD  RAPNDVPSPL  PATPDALTAF240
QPEGLFVARN  AGGDRP256

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(72-175)

MNTSCPRPAT  GRCGVHRRIL  LLLLSGLFSS  AIATSPALAQ  TAVPDRGGAA  HPHAAHITEA60
SQRFGIPAIW  IAAVMRAESA  GDVRAVSSAG  AMGLMQVMPD  TWAELRIRYR  LGRDPYDPRD120
NILAGTAYLR  EMWDRYGNVA  AMLAAYNAGP  GRYDQYRLAD  RPLPAETRAY  VASLAPALLG180
EAPSGSASVA  PWPLDWREAA  IFVVRENDAS  AADPALPDRA  PNDVPSPLPA  TPDALTALQP240
EGLFVARNAG  GDRP254

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help