CAZyme3D

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Entry ID

Information for CAZyme ID: ANS03333.1

Basic Information

GenBank IDANS03333.1
FamilyPL1
Sequence Length333
UniProt IDA0A1B1IPS8(100,100)Download
Average pLDDT?94.49
CAZy50 ID140568
CAZy50 RepYes, ANS03333.1
Structure ClusterSC_PL1_clus54
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1868677
KingdomViruses
PhylumUroviricota
ClassCaudoviricetes
Order
Family
Genus
Speciesuncultured Mediterranean phage uvDeep-CGR2-KM19-C37

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSDIYTVTSL  ADSGAGTLRE  AIDSANGPRT  VEFSVGGIIR  LQSKLTFDQS  GMTVDGETAP60
GIGITIADYE  TRVMSAANVA  LRHMRFRLGD  RVGGGQDALQ  LVESRDVIVD  QCSISWGIDE120
CLGIFDCRRV  TVQNCIISEG  LHKSSHPKGV  HSMGLIHQGG  ELSLRGNLLA  HHNMRSPFSK180
PRLSRPCQLD  MVNNVIYDWG  VLATDLGTNP  PGPNPQGGEL  HANWTNNFYR  PGPSSATANR240
EFRGRTDAKL  WDSGGNVIDG  HVFVAPWGGH  QTVSEPFSFG  STDVNSATAA  YADVLRSAGA300
SHYRDDIDQR  IVNQVSARSG  RVIDSQTQVG  GWP333

Predicted 3D structure by AlphaFold2 with pLDDT = 94.49 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSDIYTVTSL  ADSGAGTLRE  AIDSANGPRT  VEFSVGGIIR  LQSKLTFDQS  GMTVDGETAP60
GIGITIADYE  TRVMSAANVA  LRHMRFRLGD  RVGGGQDALQ  LVESRDVIVD  QCSISWGIDE120
CLGIFDCRRV  TVQNCIISEG  LHKSSHPKGV  HSMGLIHQGG  ELSLRGNLLA  HHNMRSPFSK180
PRLSRPCQLD  MVNNVIYDWG  VLATDLGTNP  PGPNPQGGEL  HANWTNNFYR  PGPSSATANR240
EFRGRTDAKL  WDSGGNVIDG  HVFVAPWGGH  QTVSEPFSFG  STDVNSATAA  YADVLRSAGA300
SHYRDDIDQR  IVNQVSARSG  RVIDSQTQVG  GWP333

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_2(36-229)

MSDIYTVTSL  ADSGAGTLRE  AIDSANGPRT  VEFSVGGIIR  LQSKLTFDQS  GMTVDGETAP60
GIGITIADYE  TRVMSAANVA  LRHMRFRLGD  RVGGGQDALQ  LVESRDVIVD  QCSISWGIDE120
CLGIFDCRRV  TVQNCIISEG  LHKSSHPKGV  HSMGLIHQGG  ELSLRGNLLA  HHNMRSPFSK180
PRLSRPCQLD  MVNNVIYDWG  VLATDLGTNP  PGPNPQGGEL  HANWTNNFYR  PGPSSATANR240
EFRGRTDAKL  WDSGGNVIDG  HVFVAPWGGH  QTVSEPFSFG  STDVNSATAA  YADVLRSAGA300
SHYRDDIDQR  IVNQVSARSG  RVIDSQTQVG  GWP333

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help