CAZyme3D

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Entry ID

Information for CAZyme ID: ANF31928.1

Basic Information

GenBank IDANF31928.1
FamilyCBM38, GH32
Sequence Length832
UniProt IDANF31928.1(MOD)Download
Average pLDDT?92.95
CAZy50 ID24420
CAZy50 RepYes, ANF31928.1
Structure ClusterSC_CBM38_clus12, SC_CBM38_clus2, SC_GH32_clus33
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1575
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTSQRFTTI  AIAAVVAVGG  IAGGTTPALA  ATPSDSRPYY  HYTPQQNWMN  DPNGLIYYGG60
KYHLFYQYNA  TGNTGGNASW  GHAVSTDLTH  WKQLPIAIPS  DADEEVWSGS  VVNDSTNTSG120
LGTGTTGPLV  AVYTSAVRAT  GVQRQSIAYS  NDGGTTWTKY  ADNPVIDIGS  HNFRDPKVFW180
YAPAKEWRMV  VVLSDQHKVA  IYGSTDLKNW  TEKSEFGPDG  VTSAVWECPD  LFPMQLDGKA240
DATKWVLTVN  VAGKAEYFVG  SFDGTTFTNG  EPPYTAPAGT  VINDFESPTY  GAGWTTTGTA300
FGDGPAHDTG  VSGALGTGYV  DTFHHSDAET  GTLTSPAFTI  DKKNLNFLIA  GGKHPYVEGG360
SIAAPAGDTF  QDFEGDSLPG  WTGTGDFAGI  APSKENLSGQ  LGNGVLDTCQ  AGCDSAQGTI420
TSPAFTITHP  YIDLLTAGGK  HPWGQAGPTA  VNLVVDGAVV  ASVTGNDSGS  MDWVYLDASA480
YLGRQATLQV  VDQNDGSAGW  GHLMVDNVVF  SDSIARPWNT  ETGANLIVNG  KVVRTATGND540
SGTLDWASWD  LSDLQGQQAQ  LQLVDLSTGG  WGHLIADQFT  LSDQPALSSV  KRAHWIDEGR600
DFYAAVTFND  APSNKRIMLG  WMNNWDYANT  IPSDGWRGSQ  SVPRLLSLRT  IDGQPRIVQA660
VVPQVSALAQ  LGKVQIAPPT  AIPAGTKPLK  VTTPANAVRV  DAVLAAGSAK  SFGLQLLRSA720
DGSQYLGVSY  DTATKTLSVD  RTHAGDVGFN  SAFPSVDGTV  VPLDHGLLRL  ELYLDKTSLE780
AFAQGGRASL  TDLVFPAAGS  NGVALTGSGG  TAGLVLLTVT  PLANAMSGAY  SG832

Predicted 3D structure by AlphaFold2 with pLDDT = 92.95 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKTSQRFTTI  AIAAVVAVGG  IAGGTTPALA  ATPSDSRPYY  HYTPQQNWMN  DPNGLIYYGG60
KYHLFYQYNA  TGNTGGNASW  GHAVSTDLTH  WKQLPIAIPS  DADEEVWSGS  VVNDSTNTSG120
LGTGTTGPLV  AVYTSAVRAT  GVQRQSIAYS  NDGGTTWTKY  ADNPVIDIGS  HNFRDPKVFW180
YAPAKEWRMV  VVLSDQHKVA  IYGSTDLKNW  TEKSEFGPDG  VTSAVWECPD  LFPMQLDGKA240
DATKWVLTVN  VAGKAEYFVG  SFDGTTFTNG  EPPYTAPAGT  VINDFESPTY  GAGWTTTGTA300
FGDGPAHDTG  VSGALGTGYV  DTFHHSDAET  GTLTSPAFTI  DKKNLNFLIA  GGKHPYVEGG360
SIAAPAGDTF  QDFEGDSLPG  WTGTGDFAGI  APSKENLSGQ  LGNGVLDTCQ  AGCDSAQGTI420
TSPAFTITHP  YIDLLTAGGK  HPWGQAGPTA  VNLVVDGAVV  ASVTGNDSGS  MDWVYLDASA480
YLGRQATLQV  VDQNDGSAGW  GHLMVDNVVF  SDSIARPWNT  ETGANLIVNG  KVVRTATGND540
SGTLDWASWD  LSDLQGQQAQ  LQLVDLSTGG  WGHLIADQFT  LSDQPALSSV  KRAHWIDEGR600
DFYAAVTFND  APSNKRIMLG  WMNNWDYANT  IPSDGWRGSQ  SVPRLLSLRT  IDGQPRIVQA660
VVPQVSALAQ  LGKVQIAPPT  AIPAGTKPLK  VTTPANAVRV  DAVLAAGSAK  SFGLQLLRSA720
DGSQYLGVSY  DTATKTLSVD  RTHAGDVGFN  SAFPSVDGTV  VPLDHGLLRL  ELYLDKTSLE780
AFAQGGRASL  TDLVFPAAGS  NGVALTGSGG  TAGLVLLTVT  PLANAMSGAY  SG832

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(41-274)+CBM38(283-356)+CBM38(371-493)+CBM38(516-566)

MKTSQRFTTI  AIAAVVAVGG  IAGGTTPALA  ATPSDSRPYY  HYTPQQNWMN  DPNGLIYYGG60
KYHLFYQYNA  TGNTGGNASW  GHAVSTDLTH  WKQLPIAIPS  DADEEVWSGS  VVNDSTNTSG120
LGTGTTGPLV  AVYTSAVRAT  GVQRQSIAYS  NDGGTTWTKY  ADNPVIDIGS  HNFRDPKVFW180
YAPAKEWRMV  VVLSDQHKVA  IYGSTDLKNW  TEKSEFGPDG  VTSAVWECPD  LFPMQLDGKA240
DATKWVLTVN  VAGKAEYFVG  SFDGTTFTNG  EPPYTAPAGT  VINDFESPTY  GAGWTTTGTA300
FGDGPAHDTG  VSGALGTGYV  DTFHHSDAET  GTLTSPAFTI  DKKNLNFLIA  GGKHPYVEGG360
SIAAPAGDTF  QDFEGDSLPG  WTGTGDFAGI  APSKENLSGQ  LGNGVLDTCQ  AGCDSAQGTI420
TSPAFTITHP  YIDLLTAGGK  HPWGQAGPTA  VNLVVDGAVV  ASVTGNDSGS  MDWVYLDASA480
YLGRQATLQV  VDQNDGSAGW  GHLMVDNVVF  SDSIARPWNT  ETGANLIVNG  KVVRTATGND540
SGTLDWASWD  LSDLQGQQAQ  LQLVDLSTGG  WGHLIADQFT  LSDQPALSSV  KRAHWIDEGR600
DFYAAVTFND  APSNKRIMLG  WMNNWDYANT  IPSDGWRGSQ  SVPRLLSLRT  IDGQPRIVQA660
VVPQVSALAQ  LGKVQIAPPT  AIPAGTKPLK  VTTPANAVRV  DAVLAAGSAK  SFGLQLLRSA720
DGSQYLGVSY  DTATKTLSVD  RTHAGDVGFN  SAFPSVDGTV  VPLDHGLLRL  ELYLDKTSLE780
AFAQGGRASL  TDLVFPAAGS  NGVALTGSGG  TAGLVLLTVT  PLANAMSGAY  SG832

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help