Information for CAZyme ID: AMY17856.1
Basic Information
| GenBank ID | AMY17856.1 |
| Family | GT2 |
| Sequence Length | 295 |
| UniProt ID | A0A143Q4P7(100,100) |
| Average pLDDT? | 92.45 |
| CAZy50 ID | 157914 |
| CAZy50 Rep | Yes, AMY17856.1 |
| Structure Cluster | SC_GT2_clus837 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1653478 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Mycobacteriales |
| Family | Nocardiaceae |
| Genus | Rhodococcus |
| Species | Rhodococcus sp. PBTS 1 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MDDMTRPTLS VVVPTYNESA VIEACLDALL AQSDDIHEIV VVDNNSQDDT VEKVEARAAE | 60 |
| HADATGRDPV VVLHETRQGL PFARDTGLNA ATGDVLARID ADARVEPGWA RATLDFFHRY | 120 |
| GDVYAAGSGT CTAYDLPFQD KFRAAQDALG RTVRQKLADG MDVDAPRLFG SNMALTREAW | 180 |
| CRVRSVTSTR TDIFEDVDLT ICATENGIRC AIIPDARALI SGRRFKSGLV SYLRYSWCDQ | 240 |
| RTFAMHDRKA ERRRAVVTML TVTIPFYLVM WAPFRMWDTR TESFDPMRLF RAPHD | 295 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.45 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MDDMTRPTLS VVVPTYNESA VIEACLDALL AQSDDIHEIV VVDNNSQDDT VEKVEARAAE | 60 |
| HADATGRDPV VVLHETRQGL PFARDTGLNA ATGDVLARID ADARVEPGWA RATLDFFHRY | 120 |
| GDVYAAGSGT CTAYDLPFQD KFRAAQDALG RTVRQKLADG MDVDAPRLFG SNMALTREAW | 180 |
| CRVRSVTSTR TDIFEDVDLT ICATENGIRC AIIPDARALI SGRRFKSGLV SYLRYSWCDQ | 240 |
| RTFAMHDRKA ERRRAVVTML TVTIPFYLVM WAPFRMWDTR TESFDPMRLF RAPHD | 295 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.