Information for CAZyme ID: AMY12695.1
Basic Information
GenBank ID | AMY12695.1 |
Family | GH171 |
Sequence Length | 820 |
UniProt ID | A0A143PVH9(100,100)![]() |
Average pLDDT? | 88.13 |
CAZy50 ID | 25478 |
CAZy50 Rep | Yes, AMY12695.1 |
Structure Cluster | SC_GH171_clus5 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1855912 |
Kingdom | Bacteria |
Phylum | Acidobacteriota |
Class | Vicinamibacteria |
Order | Vicinamibacterales |
Family | Vicinamibacteraceae |
Genus | Luteitalea |
Species | Luteitalea pratensis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MPRMFVTVAC LLACLLTQVP STLGQPAARP TTPASRAARP SAATVGAARY DLARLGEIKR | 60 |
VVEAAIARKE LPGAVVAVGT EAGVAWQASI GRRAIQPTPE PMTADTIFDA ASLTKVVATT | 120 |
TAIMMLVEQG KLRLTDRVAL HVPGFEKYGK RDITIRHLLT HSSGLRPDLE FNPEWNGYDT | 180 |
AISKAIDEVP AARPDERVIY SDINFFLLGH IVGVVSGEPL DEFTRAHVFV PLGMKDTMFK | 240 |
PPASLVKRIA PTEKCRPISF PCGQDDGTWL RGVVHDPTAR RMNNVAGHAG LFTTAADLAR | 300 |
FARMLINGGR LEGVRILAPL TVARMTSPST APGERNVRGL GWDINSSFSA NKGDLLPSRS | 360 |
FGHTGFTGTS LWIDPGTKTF IVFLSNRVHP DGKGDVTALR ARVANVVAGA IRIAPTPLAD | 420 |
THDFAQAPPS GAVAGRAAAV RTLTGIDVLQ AEGFSRLAGR KIGLLTNHTG RTRGGQSTID | 480 |
AFFAAKNLTV VALFSPEHGI RGILDEEIPS SVDEKTGLTI HSLYGKTRRA TPEMLQGIDT | 540 |
MVVDLQDIGS RFYTYMSSLG YLLEAAAPRG IEVVVLDRPN PINGWQIEGP KPDALPEGAE | 600 |
RSFIAYFPTM PVRHGMTLGE LAKLFNDERK IGAKLTVVEM KGWSREEWWD ETALMWVNPS | 660 |
PNMRSLTQAT LYPGIGAVEY ANLSVGRGTD APFERIGAPW IEGVPLAEAL NARNLPGIRF | 720 |
YPILFTPTSS VYKGEECQGV YFIVSDRTAL RPVRVGLELV SVISKLFPGK LDLKRTATLY | 780 |
GSADQLARAL TGEDPAQLEA QWAADEVNWR TLRSKYLIYR | 820 |
Predicted 3D structure by AlphaFold2 with pLDDT = 88.13 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MPRMFVTVAC LLACLLTQVP STLGQPAARP TTPASRAARP SAATVGAARY DLARLGEIKR | 60 |
VVEAAIARKE LPGAVVAVGT EAGVAWQASI GRRAIQPTPE PMTADTIFDA ASLTKVVATT | 120 |
TAIMMLVEQG KLRLTDRVAL HVPGFEKYGK RDITIRHLLT HSSGLRPDLE FNPEWNGYDT | 180 |
AISKAIDEVP AARPDERVIY SDINFFLLGH IVGVVSGEPL DEFTRAHVFV PLGMKDTMFK | 240 |
PPASLVKRIA PTEKCRPISF PCGQDDGTWL RGVVHDPTAR RMNNVAGHAG LFTTAADLAR | 300 |
FARMLINGGR LEGVRILAPL TVARMTSPST APGERNVRGL GWDINSSFSA NKGDLLPSRS | 360 |
FGHTGFTGTS LWIDPGTKTF IVFLSNRVHP DGKGDVTALR ARVANVVAGA IRIAPTPLAD | 420 |
THDFAQAPPS GAVAGRAAAV RTLTGIDVLQ AEGFSRLAGR KIGLLTNHTG RTRGGQSTID | 480 |
AFFAAKNLTV VALFSPEHGI RGILDEEIPS SVDEKTGLTI HSLYGKTRRA TPEMLQGIDT | 540 |
MVVDLQDIGS RFYTYMSSLG YLLEAAAPRG IEVVVLDRPN PINGWQIEGP KPDALPEGAE | 600 |
RSFIAYFPTM PVRHGMTLGE LAKLFNDERK IGAKLTVVEM KGWSREEWWD ETALMWVNPS | 660 |
PNMRSLTQAT LYPGIGAVEY ANLSVGRGTD APFERIGAPW IEGVPLAEAL NARNLPGIRF | 720 |
YPILFTPTSS VYKGEECQGV YFIVSDRTAL RPVRVGLELV SVISKLFPGK LDLKRTATLY | 780 |
GSADQLARAL TGEDPAQLEA QWAADEVNWR TLRSKYLIYR | 820 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.