CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AMY12695.1

Basic Information

GenBank IDAMY12695.1
FamilyGH171
Sequence Length820
UniProt IDA0A143PVH9(100,100)Download
Average pLDDT?88.13
CAZy50 ID25478
CAZy50 RepYes, AMY12695.1
Structure ClusterSC_GH171_clus5
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1855912
KingdomBacteria
PhylumAcidobacteriota
ClassVicinamibacteria
OrderVicinamibacterales
FamilyVicinamibacteraceae
GenusLuteitalea
SpeciesLuteitalea pratensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPRMFVTVAC  LLACLLTQVP  STLGQPAARP  TTPASRAARP  SAATVGAARY  DLARLGEIKR60
VVEAAIARKE  LPGAVVAVGT  EAGVAWQASI  GRRAIQPTPE  PMTADTIFDA  ASLTKVVATT120
TAIMMLVEQG  KLRLTDRVAL  HVPGFEKYGK  RDITIRHLLT  HSSGLRPDLE  FNPEWNGYDT180
AISKAIDEVP  AARPDERVIY  SDINFFLLGH  IVGVVSGEPL  DEFTRAHVFV  PLGMKDTMFK240
PPASLVKRIA  PTEKCRPISF  PCGQDDGTWL  RGVVHDPTAR  RMNNVAGHAG  LFTTAADLAR300
FARMLINGGR  LEGVRILAPL  TVARMTSPST  APGERNVRGL  GWDINSSFSA  NKGDLLPSRS360
FGHTGFTGTS  LWIDPGTKTF  IVFLSNRVHP  DGKGDVTALR  ARVANVVAGA  IRIAPTPLAD420
THDFAQAPPS  GAVAGRAAAV  RTLTGIDVLQ  AEGFSRLAGR  KIGLLTNHTG  RTRGGQSTID480
AFFAAKNLTV  VALFSPEHGI  RGILDEEIPS  SVDEKTGLTI  HSLYGKTRRA  TPEMLQGIDT540
MVVDLQDIGS  RFYTYMSSLG  YLLEAAAPRG  IEVVVLDRPN  PINGWQIEGP  KPDALPEGAE600
RSFIAYFPTM  PVRHGMTLGE  LAKLFNDERK  IGAKLTVVEM  KGWSREEWWD  ETALMWVNPS660
PNMRSLTQAT  LYPGIGAVEY  ANLSVGRGTD  APFERIGAPW  IEGVPLAEAL  NARNLPGIRF720
YPILFTPTSS  VYKGEECQGV  YFIVSDRTAL  RPVRVGLELV  SVISKLFPGK  LDLKRTATLY780
GSADQLARAL  TGEDPAQLEA  QWAADEVNWR  TLRSKYLIYR  820

Predicted 3D structure by AlphaFold2 with pLDDT = 88.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPRMFVTVAC  LLACLLTQVP  STLGQPAARP  TTPASRAARP  SAATVGAARY  DLARLGEIKR60
VVEAAIARKE  LPGAVVAVGT  EAGVAWQASI  GRRAIQPTPE  PMTADTIFDA  ASLTKVVATT120
TAIMMLVEQG  KLRLTDRVAL  HVPGFEKYGK  RDITIRHLLT  HSSGLRPDLE  FNPEWNGYDT180
AISKAIDEVP  AARPDERVIY  SDINFFLLGH  IVGVVSGEPL  DEFTRAHVFV  PLGMKDTMFK240
PPASLVKRIA  PTEKCRPISF  PCGQDDGTWL  RGVVHDPTAR  RMNNVAGHAG  LFTTAADLAR300
FARMLINGGR  LEGVRILAPL  TVARMTSPST  APGERNVRGL  GWDINSSFSA  NKGDLLPSRS360
FGHTGFTGTS  LWIDPGTKTF  IVFLSNRVHP  DGKGDVTALR  ARVANVVAGA  IRIAPTPLAD420
THDFAQAPPS  GAVAGRAAAV  RTLTGIDVLQ  AEGFSRLAGR  KIGLLTNHTG  RTRGGQSTID480
AFFAAKNLTV  VALFSPEHGI  RGILDEEIPS  SVDEKTGLTI  HSLYGKTRRA  TPEMLQGIDT540
MVVDLQDIGS  RFYTYMSSLG  YLLEAAAPRG  IEVVVLDRPN  PINGWQIEGP  KPDALPEGAE600
RSFIAYFPTM  PVRHGMTLGE  LAKLFNDERK  IGAKLTVVEM  KGWSREEWWD  ETALMWVNPS660
PNMRSLTQAT  LYPGIGAVEY  ANLSVGRGTD  APFERIGAPW  IEGVPLAEAL  NARNLPGIRF720
YPILFTPTSS  VYKGEECQGV  YFIVSDRTAL  RPVRVGLELV  SVISKLFPGK  LDLKRTATLY780
GSADQLARAL  TGEDPAQLEA  QWAADEVNWR  TLRSKYLIYR  820

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(462-819)

MPRMFVTVAC  LLACLLTQVP  STLGQPAARP  TTPASRAARP  SAATVGAARY  DLARLGEIKR60
VVEAAIARKE  LPGAVVAVGT  EAGVAWQASI  GRRAIQPTPE  PMTADTIFDA  ASLTKVVATT120
TAIMMLVEQG  KLRLTDRVAL  HVPGFEKYGK  RDITIRHLLT  HSSGLRPDLE  FNPEWNGYDT180
AISKAIDEVP  AARPDERVIY  SDINFFLLGH  IVGVVSGEPL  DEFTRAHVFV  PLGMKDTMFK240
PPASLVKRIA  PTEKCRPISF  PCGQDDGTWL  RGVVHDPTAR  RMNNVAGHAG  LFTTAADLAR300
FARMLINGGR  LEGVRILAPL  TVARMTSPST  APGERNVRGL  GWDINSSFSA  NKGDLLPSRS360
FGHTGFTGTS  LWIDPGTKTF  IVFLSNRVHP  DGKGDVTALR  ARVANVVAGA  IRIAPTPLAD420
THDFAQAPPS  GAVAGRAAAV  RTLTGIDVLQ  AEGFSRLAGR  KIGLLTNHTG  RTRGGQSTID480
AFFAAKNLTV  VALFSPEHGI  RGILDEEIPS  SVDEKTGLTI  HSLYGKTRRA  TPEMLQGIDT540
MVVDLQDIGS  RFYTYMSSLG  YLLEAAAPRG  IEVVVLDRPN  PINGWQIEGP  KPDALPEGAE600
RSFIAYFPTM  PVRHGMTLGE  LAKLFNDERK  IGAKLTVVEM  KGWSREEWWD  ETALMWVNPS660
PNMRSLTQAT  LYPGIGAVEY  ANLSVGRGTD  APFERIGAPW  IEGVPLAEAL  NARNLPGIRF720
YPILFTPTSS  VYKGEECQGV  YFIVSDRTAL  RPVRVGLELV  SVISKLFPGK  LDLKRTATLY780
GSADQLARAL  TGEDPAQLEA  QWAADEVNWR  TLRSKYLIYR  820

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help