CAZyme3D

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Entry ID

Information for CAZyme ID: AMX83701.1

Basic Information

GenBank IDAMX83701.1
FamilyGT51
Sequence Length685
UniProt IDA0A143MIP9(100,100)Download
Average pLDDT?86.31
CAZy50 ID27076
CAZy50 RepNo, UYZ23060.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID129338
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusGeobacillus
SpeciesGeobacillus subterraneus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MERQSRQHMR  QARRRRLWFR  ALVAIALALG  ALVAALHWAI  NRQNIAALEK  PLPTATVIYD60
EHGRVASKLA  AANIEEVPIE  RVPNHFLQAI  VATEDRRFYE  HNGVDYYGIL  RAVWRNVRAG120
EWVEGGSTIT  QQLAKNVFLT  NEKTLARKWK  EWLIAQKIER  TYSKKDILEM  YINRVYFGAG180
AWGVASAAKT  YFGKDVSELT  LSESALLAGL  VKAPSALSPL  RHYDKAIARR  NVVLALMREQ240
GYIDDQEWSA  AKSERIAIEQ  EPKRDPYAGK  YPYYVDELIR  EAITRYGLTQ  SDVLSGGLHI300
YTELDPNMQQ  ALEAVYADDS  LFPSSPDEVP  VQSGAVLLDP  KTGGVKALVG  GRGRHVFRGF360
NRATELRRQP  GSALKPLAVY  TPALEQGYGP  FSPLKDEPLD  FGGYRPQNYD  HTYRGTVTMY420
EAVIHSLNVP  AVWLLNEIGL  DKGMDALHRF  GLPLEKEDRQ  LGIALGGMSR  GVSPLEMAEA480
YAAFASDGAR  PDGHLITKIV  DAYGREVAEW  KPQRTIVTSE  KVAQQMTLLL  QGVIREGTGK540
RAAIPGRELA  GKTGSTEMTI  PGIDGVKDQW  MVGYTPQLVG  ALWLGYDRPD  RTHYLTTTSG600
ETAAVIFRHI  MEKALAGQPA  ARFSLPLVKQ  EERERKKRGQ  RAPESAPPKV  KETKEKPRPP660
GHEKGKNKKE  KKEKKHGKRH  GGKHE685

Predicted 3D structure by AlphaFold2 with pLDDT = 86.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(63-237)

MERQSRQHMR  QARRRRLWFR  ALVAIALALG  ALVAALHWAI  NRQNIAALEK  PLPTATVIYD60
EHGRVASKLA  AANIEEVPIE  RVPNHFLQAI  VATEDRRFYE  HNGVDYYGIL  RAVWRNVRAG120
EWVEGGSTIT  QQLAKNVFLT  NEKTLARKWK  EWLIAQKIER  TYSKKDILEM  YINRVYFGAG180
AWGVASAAKT  YFGKDVSELT  LSESALLAGL  VKAPSALSPL  RHYDKAIARR  NVVLALMREQ240
GYIDDQEWSA  AKSERIAIEQ  EPKRDPYAGK  YPYYVDELIR  EAITRYGLTQ  SDVLSGGLHI300
YTELDPNMQQ  ALEAVYADDS  LFPSSPDEVP  VQSGAVLLDP  KTGGVKALVG  GRGRHVFRGF360
NRATELRRQP  GSALKPLAVY  TPALEQGYGP  FSPLKDEPLD  FGGYRPQNYD  HTYRGTVTMY420
EAVIHSLNVP  AVWLLNEIGL  DKGMDALHRF  GLPLEKEDRQ  LGIALGGMSR  GVSPLEMAEA480
YAAFASDGAR  PDGHLITKIV  DAYGREVAEW  KPQRTIVTSE  KVAQQMTLLL  QGVIREGTGK540
RAAIPGRELA  GKTGSTEMTI  PGIDGVKDQW  MVGYTPQLVG  ALWLGYDRPD  RTHYLTTTSG600
ETAAVIFRHI  MEKALAGQPA  ARFSLPLVKQ  EERERKKRGQ  RAPESAPPKV  KETKEKPRPP660
GHEKGKNKKE  KKEKKHGKRH  GGKHE685

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help