CAZyme3D

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Entry ID

Information for CAZyme ID: AMP42675.1

Basic Information

GenBank IDAMP42675.1
FamilyGH18
Sequence Length424
UniProt IDA0A286JZ72(100,100)Download
Average pLDDT?90.85
CAZy50 ID87820
CAZy50 RepYes, AMP42675.1
Structure ClusterSC_GH18_clus175
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4839
KingdomEukaryota
PhylumMucoromycota
ClassMucoromycetes
OrderMucorales
FamilyLichtheimiaceae
GenusRhizomucor
SpeciesRhizomucor miehei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLLPFVTCF  LALTATWSNA  APSSNSTTDT  ADGGKVIVGY  FPNWLYAKWP  VSNIDFSKYT60
HINYAFAILV  KGNTPEWTDP  QQVETQLPEL  VKAAHAENAK  VLISVGGWSG  SINFSPMAAD120
ASSRKTFIKW  CTDQIDKYDI  DGIDIDWEYP  ASPEQQAGCN  VVNEAEDTKN  FLTLLKELRA180
ALDGTSKKGG  KKELTAAVYV  RTFNTPSGNM  KDVSEFASVL  DRVNIMTYDI  NGAWNSTSGP240
NAPFNFEPGL  GDADSFVSAI  ENWKKAGMPY  KKICPGLAFY  GRSATATVDM  THTNQYQAQV300
QGKPPKGDSN  DAYWDDPYCS  KDPGGNSGIW  RYGNLRSQGV  LSSPTKAASP  WIRRWDNVTQ360
TPWLFNPKDK  TFISYDDPES  IAVKVNYAAC  KGLGGLMVWS  VDEDSKNGEL  LNEVYKIRSG420
NAYG424

Predicted 3D structure by AlphaFold2 with pLDDT = 90.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRLLPFVTCF  LALTATWSNA  APSSNSTTDT  ADGGKVIVGY  FPNWLYAKWP  VSNIDFSKYT60
HINYAFAILV  KGNTPEWTDP  QQVETQLPEL  VKAAHAENAK  VLISVGGWSG  SINFSPMAAD120
ASSRKTFIKW  CTDQIDKYDI  DGIDIDWEYP  ASPEQQAGCN  VVNEAEDTKN  FLTLLKELRA180
ALDGTSKKGG  KKELTAAVYV  RTFNTPSGNM  KDVSEFASVL  DRVNIMTYDI  NGAWNSTSGP240
NAPFNFEPGL  GDADSFVSAI  ENWKKAGMPY  KKICPGLAFY  GRSATATVDM  THTNQYQAQV300
QGKPPKGDSN  DAYWDDPYCS  KDPGGNSGIW  RYGNLRSQGV  LSSPTKAASP  WIRRWDNVTQ360
TPWLFNPKDK  TFISYDDPES  IAVKVNYAAC  KGLGGLMVWS  VDEDSKNGEL  LNEVYKIRSG420
NAYG424

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(35-409)

MRLLPFVTCF  LALTATWSNA  APSSNSTTDT  ADGGKVIVGY  FPNWLYAKWP  VSNIDFSKYT60
HINYAFAILV  KGNTPEWTDP  QQVETQLPEL  VKAAHAENAK  VLISVGGWSG  SINFSPMAAD120
ASSRKTFIKW  CTDQIDKYDI  DGIDIDWEYP  ASPEQQAGCN  VVNEAEDTKN  FLTLLKELRA180
ALDGTSKKGG  KKELTAAVYV  RTFNTPSGNM  KDVSEFASVL  DRVNIMTYDI  NGAWNSTSGP240
NAPFNFEPGL  GDADSFVSAI  ENWKKAGMPY  KKICPGLAFY  GRSATATVDM  THTNQYQAQV300
QGKPPKGDSN  DAYWDDPYCS  KDPGGNSGIW  RYGNLRSQGV  LSSPTKAASP  WIRRWDNVTQ360
TPWLFNPKDK  TFISYDDPES  IAVKVNYAAC  KGLGGLMVWS  VDEDSKNGEL  LNEVYKIRSG420
NAYG424

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help