CAZyme3D

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Entry ID

Information for CAZyme ID: AMM22173.1

Basic Information

GenBank IDAMM22173.1
FamilyGH114
Sequence Length296
UniProt IDA0A126Z4T5(100,100)Download
Average pLDDT?85.32
CAZy50 ID157719
CAZy50 RepYes, AMM22173.1
Structure ClusterSC_GH114_clus7
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1795630
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusFrondihabitans
SpeciesFrondihabitans sp. PAMC 28766

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHSVLAASLA  LGAVAALVAC  AATGTGSSGG  SGSTGSSGGS  GSTGGSESAS  VARTDGGHVT60
LPPTSGAADY  QLGGAYQPPA  GVTVVTRDST  SHPAAGVYSI  CYVNGFQTQP  DVKWPSDLYL120
HTASGAPLVD  PGWPGEHIID  ISTAAKRTAA  AARIDESTDL  CAKKGFKAVE  FDNLDSYTRS180
KKQLTLGEAV  SFATLLVAHA  HAQGLAAGQK  NTTQLGSRGK  AEIGYDFAVA  EQCDLYSECP240
AYTKVYGKHV  IDIEYTAGLR  GTFAQVCARK  TTPPLTILRD  VDLTTPASSR  YVYRHC296

Predicted 3D structure by AlphaFold2 with pLDDT = 85.32 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHSVLAASLA  LGAVAALVAC  AATGTGSSGG  SGSTGSSGGS  GSTGGSESAS  VARTDGGHVT60
LPPTSGAADY  QLGGAYQPPA  GVTVVTRDST  SHPAAGVYSI  CYVNGFQTQP  DVKWPSDLYL120
HTASGAPLVD  PGWPGEHIID  ISTAAKRTAA  AARIDESTDL  CAKKGFKAVE  FDNLDSYTRS180
KKQLTLGEAV  SFATLLVAHA  HAQGLAAGQK  NTTQLGSRGK  AEIGYDFAVA  EQCDLYSECP240
AYTKVYGKHV  IDIEYTAGLR  GTFAQVCARK  TTPPLTILRD  VDLTTPASSR  YVYRHC296

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH114(85-255)

MHSVLAASLA  LGAVAALVAC  AATGTGSSGG  SGSTGSSGGS  GSTGGSESAS  VARTDGGHVT60
LPPTSGAADY  QLGGAYQPPA  GVTVVTRDST  SHPAAGVYSI  CYVNGFQTQP  DVKWPSDLYL120
HTASGAPLVD  PGWPGEHIID  ISTAAKRTAA  AARIDESTDL  CAKKGFKAVE  FDNLDSYTRS180
KKQLTLGEAV  SFATLLVAHA  HAQGLAAGQK  NTTQLGSRGK  AEIGYDFAVA  EQCDLYSECP240
AYTKVYGKHV  IDIEYTAGLR  GTFAQVCARK  TTPPLTILRD  VDLTTPASSR  YVYRHC296

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help