Information for CAZyme ID: AMM19284.1
Basic Information
| GenBank ID | AMM19284.1 |
| Family | GH78 |
| Sequence Length | 932 |
| UniProt ID | A0A126YYG8(100,100) |
| Average pLDDT? | 89.90 |
| CAZy50 ID | 17539 |
| CAZy50 Rep | Yes, AMM19284.1 |
| Structure Cluster | SC_GH78_clus72 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1795630 |
| Kingdom | Bacteria |
| Phylum | Actinomycetota |
| Class | Actinomycetes |
| Order | Micrococcales |
| Family | Microbacteriaceae |
| Genus | Frondihabitans |
| Species | Frondihabitans sp. PAMC 28766 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MGTAVIASVA LGVSICGAGA AQAAPNAATP SAAATAATSP FAADRAAAQK YNYSPASRTV | 60 |
| RPTAITRTTG QVAGGTAILH GGAATLQGAG SSITLDFGKE VGGLATIHFA KGSAADQQLG | 120 |
| VAFSESNQYI GENSDSSNGG SGSDGSLTAA VAPGGSWTVP QASLRGGFRY LTLFSKTGGP | 180 |
| IGLQNVSVSI SFDPTATDLR SYDNYFTSND KLLNRIWYAG AYTVQTNVIA PTTGRVWGPP | 240 |
| ASGWDNSGTV GVGTSVLVDG AKRDRTVWPG DLGVSVPTEY ASLGDLTPTR NALTTLFNNQ | 300 |
| QASGELPFAG PEVNAFGSDT YHLWTLLGTA NYYQYSHDGV WLQSEWSKYK KAVAFSLAKV | 360 |
| DSTGLMNVTG TNDWARAGQG GDNVEANALL YETLMTGAQM ATVEKDPALA KSWRASAASI | 420 |
| KSAVNTQLWD ASAGQYRDNP TSDLHPQDGN SLAVWYGLAS AARASQVSAA LTQNWNQYGA | 480 |
| TTPENGGQIS TFPGSMEVQA HLAAGDTTQA LDLIRTEWGY MLDSPLGTGS TFWEGYLANG | 540 |
| QFGYGGAYMS NSHGWATGPT SALTFDVLGI HPTTLTGAYD IVPQTGDLKN ASGSLKTPLG | 600 |
| DIEVAWKHDQ AAKTFTEQLD APVAAVGQVK VPTYGASTVV TVNGKRVWNG TTGFAYGAHV | 660 |
| EGGYVVLTGV PAHANLSSQA LSAVPTALTA RLTSTVTDPV LPGSTVTIPV TVGATGAKVV | 720 |
| TGSVTAKVPA GWSAPAVPFS IDTRGGAAQT VVKVAVTAPK TGSGGSLSIP ITVSSSTGSG | 780 |
| AASVKTKASL LTFGAWAPGV TATASSTAGA NEYEGQPRTY DAGNAVDGDL ATFWNDATPG | 840 |
| DFPDTLTVTP AAPTTLEGVG FASIVDGVPT DFVVQTTTDG STWSTQATVT GNTALARWIP | 900 |
| FDAPVTATGV RVVVSASQTQ NGNYSRIAEL TP | 932 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.90 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MGTAVIASVA LGVSICGAGA AQAAPNAATP SAAATAATSP FAADRAAAQK YNYSPASRTV | 60 |
| RPTAITRTTG QVAGGTAILH GGAATLQGAG SSITLDFGKE VGGLATIHFA KGSAADQQLG | 120 |
| VAFSESNQYI GENSDSSNGG SGSDGSLTAA VAPGGSWTVP QASLRGGFRY LTLFSKTGGP | 180 |
| IGLQNVSVSI SFDPTATDLR SYDNYFTSND KLLNRIWYAG AYTVQTNVIA PTTGRVWGPP | 240 |
| ASGWDNSGTV GVGTSVLVDG AKRDRTVWPG DLGVSVPTEY ASLGDLTPTR NALTTLFNNQ | 300 |
| QASGELPFAG PEVNAFGSDT YHLWTLLGTA NYYQYSHDGV WLQSEWSKYK KAVAFSLAKV | 360 |
| DSTGLMNVTG TNDWARAGQG GDNVEANALL YETLMTGAQM ATVEKDPALA KSWRASAASI | 420 |
| KSAVNTQLWD ASAGQYRDNP TSDLHPQDGN SLAVWYGLAS AARASQVSAA LTQNWNQYGA | 480 |
| TTPENGGQIS TFPGSMEVQA HLAAGDTTQA LDLIRTEWGY MLDSPLGTGS TFWEGYLANG | 540 |
| QFGYGGAYMS NSHGWATGPT SALTFDVLGI HPTTLTGAYD IVPQTGDLKN ASGSLKTPLG | 600 |
| DIEVAWKHDQ AAKTFTEQLD APVAAVGQVK VPTYGASTVV TVNGKRVWNG TTGFAYGAHV | 660 |
| EGGYVVLTGV PAHANLSSQA LSAVPTALTA RLTSTVTDPV LPGSTVTIPV TVGATGAKVV | 720 |
| TGSVTAKVPA GWSAPAVPFS IDTRGGAAQT VVKVAVTAPK TGSGGSLSIP ITVSSSTGSG | 780 |
| AASVKTKASL LTFGAWAPGV TATASSTAGA NEYEGQPRTY DAGNAVDGDL ATFWNDATPG | 840 |
| DFPDTLTVTP AAPTTLEGVG FASIVDGVPT DFVVQTTTDG STWSTQATVT GNTALARWIP | 900 |
| FDAPVTATGV RVVVSASQTQ NGNYSRIAEL TP | 932 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.