Information for CAZyme ID: ALS63630.1
Basic Information
| GenBank ID | ALS63630.1 |
| Family | GH73 |
| Sequence Length | 855 |
| UniProt ID | ALS63630.1(MOD) |
| Average pLDDT? | 70.63 |
| CAZy50 ID | 22550 |
| CAZy50 Rep | Yes, ALS63630.1 |
| Structure Cluster | SC_GH73_clus142 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 93218 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Pandoraea |
| Species | Pandoraea apista |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MADFSTLSDD QLLASLAPAR AAPQSFTPAS FAQQYGHVAQ ATGQKLGVDP SLLLGQWGLE | 60 |
| TGWGKSIVPG TNNLGNIKDF SGEGVAARDN MTGSSDRYRA YATPQAFADD YADLISRKYP | 120 |
| GVVGSGSDSA KFASALKAGG YAQDPNYVSK LQQVISTAQR AQPSALSRVG NAVAGAISGT | 180 |
| ANAATPQELS GISDADLLAA LASRGVQPQA SPQPRGTVEE VGRQLGLTAR AAGHGIADAL | 240 |
| GLVANPVNAL INTVTGSKFQ DVDTLIKRGV DAITPTPANT TERVVGDIAG AVANPVNLLG | 300 |
| GQLATGATST LGAIGRGAVA GAATAGMQPL HADDTLADYG RRIGAGAAGG AAGAGAGQAI | 360 |
| GAVADKVATG IDRVMSAVRS RIPSNQVAAQ VSADDLLAAA ARDQNIDLSA LSQNVRNGLR | 420 |
| NQAAEALASN RTIDAPALLR QAEGTAVLGS GNGLTLGQAT RDPMQFATER NMRGIVGAGE | 480 |
| PLAERFAGQN RALIDSLNRR GAANAADEFN TGQAAIDAVS AVDKAARDRI AGLYGQARDL | 540 |
| NAGDIPLDHV GFIKSANEAL DKNLKQAFLP DDVRKTLNSI SSGDTPLTVG VAEQLKTILG | 600 |
| DATKTAQRAG NGNQVAALGM VRDALENVPA SGSVGVEAQT AFNAARAAAR ERFGAIDSNP | 660 |
| ALKAVVNGDA VPDNFFKRYV LNGNVKDVNS LMGIVPDQGV SLRNQIVDYL KQKALKGASD | 720 |
| EVGVFSQSDY NKALNSLGDA KLNALFPPEQ VAQLKQIGRV ASYIQAQPAG SAVNNSNTAS | 780 |
| AGANLALGAL DRLGKVPGLN IARNSINQFL NERATGQALA SQIDSVARPV TADTVNQLLP | 840 |
| FLPGIAGAAS VPDRR | 855 |
Predicted 3D structure by AlphaFold2 with pLDDT = 70.63 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MADFSTLSDD QLLASLAPAR AAPQSFTPAS FAQQYGHVAQ ATGQKLGVDP SLLLGQWGLE | 60 |
| TGWGKSIVPG TNNLGNIKDF SGEGVAARDN MTGSSDRYRA YATPQAFADD YADLISRKYP | 120 |
| GVVGSGSDSA KFASALKAGG YAQDPNYVSK LQQVISTAQR AQPSALSRVG NAVAGAISGT | 180 |
| ANAATPQELS GISDADLLAA LASRGVQPQA SPQPRGTVEE VGRQLGLTAR AAGHGIADAL | 240 |
| GLVANPVNAL INTVTGSKFQ DVDTLIKRGV DAITPTPANT TERVVGDIAG AVANPVNLLG | 300 |
| GQLATGATST LGAIGRGAVA GAATAGMQPL HADDTLADYG RRIGAGAAGG AAGAGAGQAI | 360 |
| GAVADKVATG IDRVMSAVRS RIPSNQVAAQ VSADDLLAAA ARDQNIDLSA LSQNVRNGLR | 420 |
| NQAAEALASN RTIDAPALLR QAEGTAVLGS GNGLTLGQAT RDPMQFATER NMRGIVGAGE | 480 |
| PLAERFAGQN RALIDSLNRR GAANAADEFN TGQAAIDAVS AVDKAARDRI AGLYGQARDL | 540 |
| NAGDIPLDHV GFIKSANEAL DKNLKQAFLP DDVRKTLNSI SSGDTPLTVG VAEQLKTILG | 600 |
| DATKTAQRAG NGNQVAALGM VRDALENVPA SGSVGVEAQT AFNAARAAAR ERFGAIDSNP | 660 |
| ALKAVVNGDA VPDNFFKRYV LNGNVKDVNS LMGIVPDQGV SLRNQIVDYL KQKALKGASD | 720 |
| EVGVFSQSDY NKALNSLGDA KLNALFPPEQ VAQLKQIGRV ASYIQAQPAG SAVNNSNTAS | 780 |
| AGANLALGAL DRLGKVPGLN IARNSINQFL NERATGQALA SQIDSVARPV TADTVNQLLP | 840 |
| FLPGIAGAAS VPDRR | 855 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.