CAZyme3D

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Entry ID

Information for CAZyme ID: ALO66626.1

Basic Information

GenBank IDALO66626.1
FamilyGH111
Sequence Length408
UniProt IDA0A0S2LYT7(100,100)Download
Average pLDDT?92.21
CAZy50 ID94564
CAZy50 RepYes, ALO66626.1
Structure ClusterSC_GH111_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID656366
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusArthrobacter
SpeciesArthrobacter alpinus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNALPNCTWA  TAKGPDGFHL  TSPPDLSKPI  LTGAQKTRAK  DLFAVCFGDE  ENYSLELQGW60
LAGLTKNLRK  EAPDALAHTN  QYAGQWSDAD  TRNFMAAADP  DLLTFDEYYF  SMTSNYAGGS120
ITKLYNNVER  LRRLAMAGND  GSFKSPLGFG  QYTMGFKAGD  APWQEGGDYV  VSESEQNIIS180
YVTWAMGGKW  LNLFRWEKSA  HATSLLARSD  AAGSFTVQAN  RYAALNARMA  ALSPYLTRLR240
SKSIAIVSGR  NAAGANSQPS  VPQFSAAVDP  GTKLVGLSAK  NVGSANGGLP  GDVFFGSFRP300
IPGMTAAESA  GIYTNPETPA  FMVVNGLAMP  NIDKTNEFGV  GGSSAETAQI  VTLRFDLADG360
SLKKNQLRTV  AAGKGKVKQV  KLDHVSGTIY  EAKVRIGGGL  GELFWWDV408

Predicted 3D structure by AlphaFold2 with pLDDT = 92.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNALPNCTWA  TAKGPDGFHL  TSPPDLSKPI  LTGAQKTRAK  DLFAVCFGDE  ENYSLELQGW60
LAGLTKNLRK  EAPDALAHTN  QYAGQWSDAD  TRNFMAAADP  DLLTFDEYYF  SMTSNYAGGS120
ITKLYNNVER  LRRLAMAGND  GSFKSPLGFG  QYTMGFKAGD  APWQEGGDYV  VSESEQNIIS180
YVTWAMGGKW  LNLFRWEKSA  HATSLLARSD  AAGSFTVQAN  RYAALNARMA  ALSPYLTRLR240
SKSIAIVSGR  NAAGANSQPS  VPQFSAAVDP  GTKLVGLSAK  NVGSANGGLP  GDVFFGSFRP300
IPGMTAAESA  GIYTNPETPA  FMVVNGLAMP  NIDKTNEFGV  GGSSAETAQI  VTLRFDLADG360
SLKKNQLRTV  AAGKGKVKQV  KLDHVSGTIY  EAKVRIGGGL  GELFWWDV408

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH111(25-407)

MNALPNCTWA  TAKGPDGFHL  TSPPDLSKPI  LTGAQKTRAK  DLFAVCFGDE  ENYSLELQGW60
LAGLTKNLRK  EAPDALAHTN  QYAGQWSDAD  TRNFMAAADP  DLLTFDEYYF  SMTSNYAGGS120
ITKLYNNVER  LRRLAMAGND  GSFKSPLGFG  QYTMGFKAGD  APWQEGGDYV  VSESEQNIIS180
YVTWAMGGKW  LNLFRWEKSA  HATSLLARSD  AAGSFTVQAN  RYAALNARMA  ALSPYLTRLR240
SKSIAIVSGR  NAAGANSQPS  VPQFSAAVDP  GTKLVGLSAK  NVGSANGGLP  GDVFFGSFRP300
IPGMTAAESA  GIYTNPETPA  FMVVNGLAMP  NIDKTNEFGV  GGSSAETAQI  VTLRFDLADG360
SLKKNQLRTV  AAGKGKVKQV  KLDHVSGTIY  EAKVRIGGGL  GELFWWDV408

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help