CAZyme3D

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Entry ID

Information for CAZyme ID: ALJ06121.1

Basic Information

GenBank IDALJ06121.1
FamilyPL8_3
Sequence Length801
UniProt IDA0A0P0CIT3(100,100)Download
Average pLDDT?90.50
CAZy50 ID27237
CAZy50 RepYes, ALJ06121.1
Structure ClusterSC_PL8_clus46
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1736674
KingdomBacteria
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusPseudalgibacter
SpeciesPseudalgibacter alginicilyticus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRKLKIDLSN  FKIIAAICLT  LVVARIEMHA  QVYDFNVLRE  RVVDDQRVGV  VGAATIDTWI60
SSQAANGSWS  SLQYGANTNF  STSDNHLYRL  WNIAAACSNI  NDANYNNTNY  KDAVKKGLEY120
WYTANTVDSN  WWYNKIYFPQ  YLGEILIFMR  EFDDFIPKTS  SAGIDEPEIL  SLFEPSAVND180
ITSHGTGANA  IDIGLHYVYR  GLLTENATLL  EASRDKLETI  LSDNIQEDMV  YHDHGPQIMI240
SSYGWVFCDG  LVRLASYMAD  SPAAFDVNSG  NFNKVLRFIR  ETQISSTRGS  TWDFGVGGRS300
VSRSSGIGAS  MNYLEKLAQF  IDPDNASIYN  DALGRLKGGE  SADYNVREFN  KHYWVSDYTQ360
HARSGYLFTV  RNTSNRTVEA  ETGNGENLKA  NYFSYGATNI  LVDGDEYRDI  MPYWDWAMIP420
GTTYPHFTSF  PIRSTWGTNY  GVTSFVGGVS  NGEYGASTLD  MNEEGVKAKK  AWFFFEDEMV480
CLGSNISYAG  STNVRTTINQ  SNLSVASYIN  ELGSTNEVTQ  SLSGSTYVNT  NLNYLRNGKI540
GYFFPNQGNI  KYTMTSQSGT  WASINSASGS  TATQSGYVLS  LWVDHGSAPS  NANYSYIVVP600
GIDSKSKAQS  YNMDAVEIIE  NSGEIQAVYH  NTLNIFEAIF  YEAGSVDFNG  KTITVDKPCA660
IMLTNNIELT  VSSPSQDQST  VSVKLNANGS  EETLVVNLPT  SSNFKGMSVT  ENFPQTLGVN720
DLEKDLMDFK  IYPNPTQGIF  EIKGNNNQQV  FYSVLSVDGK  KIEQGHYNGS  TIINLSGYKS780
GMYFLSLRSL  ETTVTRKIIK  Y801

Predicted 3D structure by AlphaFold2 with pLDDT = 90.50 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRKLKIDLSN  FKIIAAICLT  LVVARIEMHA  QVYDFNVLRE  RVVDDQRVGV  VGAATIDTWI60
SSQAANGSWS  SLQYGANTNF  STSDNHLYRL  WNIAAACSNI  NDANYNNTNY  KDAVKKGLEY120
WYTANTVDSN  WWYNKIYFPQ  YLGEILIFMR  EFDDFIPKTS  SAGIDEPEIL  SLFEPSAVND180
ITSHGTGANA  IDIGLHYVYR  GLLTENATLL  EASRDKLETI  LSDNIQEDMV  YHDHGPQIMI240
SSYGWVFCDG  LVRLASYMAD  SPAAFDVNSG  NFNKVLRFIR  ETQISSTRGS  TWDFGVGGRS300
VSRSSGIGAS  MNYLEKLAQF  IDPDNASIYN  DALGRLKGGE  SADYNVREFN  KHYWVSDYTQ360
HARSGYLFTV  RNTSNRTVEA  ETGNGENLKA  NYFSYGATNI  LVDGDEYRDI  MPYWDWAMIP420
GTTYPHFTSF  PIRSTWGTNY  GVTSFVGGVS  NGEYGASTLD  MNEEGVKAKK  AWFFFEDEMV480
CLGSNISYAG  STNVRTTINQ  SNLSVASYIN  ELGSTNEVTQ  SLSGSTYVNT  NLNYLRNGKI540
GYFFPNQGNI  KYTMTSQSGT  WASINSASGS  TATQSGYVLS  LWVDHGSAPS  NANYSYIVVP600
GIDSKSKAQS  YNMDAVEIIE  NSGEIQAVYH  NTLNIFEAIF  YEAGSVDFNG  KTITVDKPCA660
IMLTNNIELT  VSSPSQDQST  VSVKLNANGS  EETLVVNLPT  SSNFKGMSVT  ENFPQTLGVN720
DLEKDLMDFK  IYPNPTQGIF  EIKGNNNQQV  FYSVLSVDGK  KIEQGHYNGS  TIINLSGYKS780
GMYFLSLRSL  ETTVTRKIIK  Y801

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL8_3(351-602)

MRKLKIDLSN  FKIIAAICLT  LVVARIEMHA  QVYDFNVLRE  RVVDDQRVGV  VGAATIDTWI60
SSQAANGSWS  SLQYGANTNF  STSDNHLYRL  WNIAAACSNI  NDANYNNTNY  KDAVKKGLEY120
WYTANTVDSN  WWYNKIYFPQ  YLGEILIFMR  EFDDFIPKTS  SAGIDEPEIL  SLFEPSAVND180
ITSHGTGANA  IDIGLHYVYR  GLLTENATLL  EASRDKLETI  LSDNIQEDMV  YHDHGPQIMI240
SSYGWVFCDG  LVRLASYMAD  SPAAFDVNSG  NFNKVLRFIR  ETQISSTRGS  TWDFGVGGRS300
VSRSSGIGAS  MNYLEKLAQF  IDPDNASIYN  DALGRLKGGE  SADYNVREFN  KHYWVSDYTQ360
HARSGYLFTV  RNTSNRTVEA  ETGNGENLKA  NYFSYGATNI  LVDGDEYRDI  MPYWDWAMIP420
GTTYPHFTSF  PIRSTWGTNY  GVTSFVGGVS  NGEYGASTLD  MNEEGVKAKK  AWFFFEDEMV480
CLGSNISYAG  STNVRTTINQ  SNLSVASYIN  ELGSTNEVTQ  SLSGSTYVNT  NLNYLRNGKI540
GYFFPNQGNI  KYTMTSQSGT  WASINSASGS  TATQSGYVLS  LWVDHGSAPS  NANYSYIVVP600
GIDSKSKAQS  YNMDAVEIIE  NSGEIQAVYH  NTLNIFEAIF  YEAGSVDFNG  KTITVDKPCA660
IMLTNNIELT  VSSPSQDQST  VSVKLNANGS  EETLVVNLPT  SSNFKGMSVT  ENFPQTLGVN720
DLEKDLMDFK  IYPNPTQGIF  EIKGNNNQQV  FYSVLSVDGK  KIEQGHYNGS  TIINLSGYKS780
GMYFLSLRSL  ETTVTRKIIK  Y801

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help