CAZyme3D

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Entry ID

Information for CAZyme ID: ALI93559.1

Basic Information

GenBank IDALI93559.1
FamilyGH18
Sequence Length541
UniProt IDA0A0P0CJB9(100,100)Download
Average pLDDT?77.78
CAZy50 ID61016
CAZy50 RepYes, ALI93559.1
Structure ClusterSC_GH18_clus350
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID696354
KingdomEukaryota
PhylumAscomycota
ClassSordariomycetes
OrderHypocreales
FamilyClavicipitaceae
GenusHypocrella
SpeciesHypocrella siamensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MDIHCAEGVC  INNCEGIKEC  GAGKRTCPLN  EEQSSLRSAC  GTNSGLCSRS  EPQRPSCSAD60
SHKLKRVVGY  YEEWSKERPC  NQISPEQIPA  GVYTHLNFAF  ARIDPKSYKL  QANISDYEGL120
TSLKKRDRDR  DLKVFIAVGG  FSSNKPDSAA  TIFSNMVASP  EKSDIFISSV  VDFVNSHGFD180
GIDLDWEYPG  AQDRGGRAED  YVNFPNFVEK  LKKALRKTDG  RDGISITLPS  SSGYLSHFDI240
KALELHVDHF  NMMTYDLHGT  WDQQDNPYLN  AHTNLTEAKQ  AMDLLWHKGI  IPDKIALGLA300
FYGKTYIMQD  PDACHEPGCR  YVSGGAAAPC  SNEDGVMLNS  EIEQVISNTS  VSPRLYEDAA360
VKILSYNHDH  WVSFDDEETL  KMRIDFAKSQ  CLGGVMVWAV  SQDASDGRYS  LAVGRAATTA420
DADADNVSMF  MPGPIEAKVY  EAEKPDDKEC  KWTNCLERCP  KGLLRTKLNE  SDAHDGKDMS480
DAEYCQGQGK  LQLCCPPKQS  RAFTQRKRRY  NVWIAGVIIL  GWDGSVTSAC  LIAAGFITLK540
M541

Predicted 3D structure by AlphaFold2 with pLDDT = 77.78 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MDIHCAEGVC  INNCEGIKEC  GAGKRTCPLN  EEQSSLRSAC  GTNSGLCSRS  EPQRPSCSAD60
SHKLKRVVGY  YEEWSKERPC  NQISPEQIPA  GVYTHLNFAF  ARIDPKSYKL  QANISDYEGL120
TSLKKRDRDR  DLKVFIAVGG  FSSNKPDSAA  TIFSNMVASP  EKSDIFISSV  VDFVNSHGFD180
GIDLDWEYPG  AQDRGGRAED  YVNFPNFVEK  LKKALRKTDG  RDGISITLPS  SSGYLSHFDI240
KALELHVDHF  NMMTYDLHGT  WDQQDNPYLN  AHTNLTEAKQ  AMDLLWHKGI  IPDKIALGLA300
FYGKTYIMQD  PDACHEPGCR  YVSGGAAAPC  SNEDGVMLNS  EIEQVISNTS  VSPRLYEDAA360
VKILSYNHDH  WVSFDDEETL  KMRIDFAKSQ  CLGGVMVWAV  SQDASDGRYS  LAVGRAATTA420
DADADNVSMF  MPGPIEAKVY  EAEKPDDKEC  KWTNCLERCP  KGLLRTKLNE  SDAHDGKDMS480
DAEYCQGQGK  LQLCCPPKQS  RAFTQRKRRY  NVWIAGVIIL  GWDGSVTSAC  LIAAGFITLK540
M541

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(65-408)

MDIHCAEGVC  INNCEGIKEC  GAGKRTCPLN  EEQSSLRSAC  GTNSGLCSRS  EPQRPSCSAD60
SHKLKRVVGY  YEEWSKERPC  NQISPEQIPA  GVYTHLNFAF  ARIDPKSYKL  QANISDYEGL120
TSLKKRDRDR  DLKVFIAVGG  FSSNKPDSAA  TIFSNMVASP  EKSDIFISSV  VDFVNSHGFD180
GIDLDWEYPG  AQDRGGRAED  YVNFPNFVEK  LKKALRKTDG  RDGISITLPS  SSGYLSHFDI240
KALELHVDHF  NMMTYDLHGT  WDQQDNPYLN  AHTNLTEAKQ  AMDLLWHKGI  IPDKIALGLA300
FYGKTYIMQD  PDACHEPGCR  YVSGGAAAPC  SNEDGVMLNS  EIEQVISNTS  VSPRLYEDAA360
VKILSYNHDH  WVSFDDEETL  KMRIDFAKSQ  CLGGVMVWAV  SQDASDGRYS  LAVGRAATTA420
DADADNVSMF  MPGPIEAKVY  EAEKPDDKEC  KWTNCLERCP  KGLLRTKLNE  SDAHDGKDMS480
DAEYCQGQGK  LQLCCPPKQS  RAFTQRKRRY  NVWIAGVIIL  GWDGSVTSAC  LIAAGFITLK540
M541

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help