CAZyme3D

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Entry ID

Information for CAZyme ID: ALC48840.1

Basic Information

GenBank IDALC48840.1
FamilyAA3_2
Sequence Length642
UniProt IDA0A0M4ERP7(100,100)Download
Average pLDDT?92.79
CAZy50 ID46422
CAZy50 RepYes, ALC48840.1
Structure ClusterSC_AA3_clus123
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID30019
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderDiptera
FamilyDrosophilidae
GenusDrosophila
SpeciesDrosophila busckii
PDB file does not exist: ../CAZyme3D/mapped_uniprot_cazy/A0A0M4ERP7.pdb

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTTMTTFVTM  WRFLFTLAPS  AVFLLMLHNG  VKDYRPDIVD  EANRVRSIRI  EELRQSYDFV60
IVGGGSAGCA  LAARLSENPA  WSVLLLEAGG  DEPFLFDLPQ  LYPLFQRSPW  DWMYSVEPSD120
RYCLAMEDQR  CFWPRAKVLG  GCSSINAMMY  IRGNRHDYDQ  WAQLGNAGWD  YATVLHYFRK180
MEDMRDPQHQ  HSPYHGHGGP  ISVERYRTPS  PLLPIFMQAA  TQLGLQHPDG  DFNGRTQSGF240
APPHGTLRDG  LRCSANKGYM  RRSWRRPNLD  IVLKAFAEQL  LVEPAPSKRV  WGVRFEHAAL300
RHVVRASKEV  LLAAGALASP  QLLLVSGIGP  AEQLQPLGIQ  LQQHLPGVGR  NLQDHISTSG360
AVYTVQSAQP  NTHLSFIVPE  QLNEQSVRDF  VQSRKGFFYA  MPVSEVMGFA  HSRYQQQQQQ420
QRRAGEDWPD  LQLFMGSYGY  GADGGMVGRR  GAAITLENYA  QTFEPVLYQD  SFVIAPLLMR480
PRSRGYLQIV  SADARVHPRI  HANYYDHPLD  MAIMVEGLKL  AHRLTQTPAL  QRINATLNIY540
EWRNCPEVEY  LSDAFWECLA  RYYSQTIYHP  VGTCKMAPQS  DPLGVVDPRL  RVRGLRNLRV600
IDASIMPTIP  TGNTNAPTIM  IAERGADIIK  EDWHHYPQGG  WL642

Predicted 3D structure by AlphaFold2 with pLDDT = 92.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTTMTTFVTM  WRFLFTLAPS  AVFLLMLHNG  VKDYRPDIVD  EANRVRSIRI  EELRQSYDFV60
IVGGGSAGCA  LAARLSENPA  WSVLLLEAGG  DEPFLFDLPQ  LYPLFQRSPW  DWMYSVEPSD120
RYCLAMEDQR  CFWPRAKVLG  GCSSINAMMY  IRGNRHDYDQ  WAQLGNAGWD  YATVLHYFRK180
MEDMRDPQHQ  HSPYHGHGGP  ISVERYRTPS  PLLPIFMQAA  TQLGLQHPDG  DFNGRTQSGF240
APPHGTLRDG  LRCSANKGYM  RRSWRRPNLD  IVLKAFAEQL  LVEPAPSKRV  WGVRFEHAAL300
RHVVRASKEV  LLAAGALASP  QLLLVSGIGP  AEQLQPLGIQ  LQQHLPGVGR  NLQDHISTSG360
AVYTVQSAQP  NTHLSFIVPE  QLNEQSVRDF  VQSRKGFFYA  MPVSEVMGFA  HSRYQQQQQQ420
QRRAGEDWPD  LQLFMGSYGY  GADGGMVGRR  GAAITLENYA  QTFEPVLYQD  SFVIAPLLMR480
PRSRGYLQIV  SADARVHPRI  HANYYDHPLD  MAIMVEGLKL  AHRLTQTPAL  QRINATLNIY540
EWRNCPEVEY  LSDAFWECLA  RYYSQTIYHP  VGTCKMAPQS  DPLGVVDPRL  RVRGLRNLRV600
IDASIMPTIP  TGNTNAPTIM  IAERGADIIK  EDWHHYPQGG  WL642

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : AA3_2(55-632)

0

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help