Information for CAZyme ID: AKV01208.1
Basic Information
| GenBank ID | AKV01208.1 |
| Family | GH172 |
| Sequence Length | 621 |
| UniProt ID | A0A0K1Q663(100,100) |
| Average pLDDT? | 93.15 |
| CAZy50 ID | 49490 |
| CAZy50 Rep | Yes, AKV01208.1 |
| Structure Cluster | SC_GH172_clus4 |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1391654 |
| Kingdom | Bacteria |
| Phylum | Myxococcota |
| Class | |
| Order | Polyangiales |
| Family | Labilitrichaceae |
| Genus | Labilithrix |
| Species | Labilithrix luteola |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MPKPGATTPV LALVPPPYDV GSTAAALEHW PDIVPGIETR AFTSFDRRGG NDDGFAGTWS | 60 |
| ELYEDDRAEH VIFDAAGPGV LRTLWFTSKV DGNGPLALGQ VRFYFDGESE PRIAIDADAL | 120 |
| FAPGGSPFVA PLVAGNQLTS GGFASWAPLP YRGRLRITTE RRAGFYAAHY ETFPPDWNVD | 180 |
| SYVARTEDAK LVDAFEATGP SALPLDDVAL DTTVTGAGEI DVLRFEPTTP LDADPRAARL | 240 |
| RITFDRAAKP QVDVPLPAFF GSGLGDATIR SVAWTMQPGL WESRLPMPFW ESYRITVTGL | 300 |
| SGKLRAHVSP SKRTRETAGY LEAHWNEARP TSTGSDFVYV DTTGTGKLIG TVLAVEPLAP | 360 |
| YGETVNKQWW EGDLRSSADG RRTPSIHGTG HEDDHLGGWS NEFLSRPFTQ PMQGCPKTEL | 420 |
| LDTNGQYNAN ASMYRLWPGI TFTNALRHTT EHGAGNGRSL NYSSVAFLYR RPEPSTTRTD | 480 |
| AFDVTDREAA AAHAYAAGAP RIEAITSAFE GEDASALSSD THHYDSAVSF ELAVDPKNDG | 540 |
| VVLRRLFDAT HGGERASIEV DGSVVATIYV AEYDPDRRWM ERDVFLPPQI TKGKTRLHVR | 600 |
| LVPEGDFNAA RFEAWSVKSP F | 621 |
Predicted 3D structure by AlphaFold2 with pLDDT = 93.15 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
| MPKPGATTPV LALVPPPYDV GSTAAALEHW PDIVPGIETR AFTSFDRRGG NDDGFAGTWS | 60 |
| ELYEDDRAEH VIFDAAGPGV LRTLWFTSKV DGNGPLALGQ VRFYFDGESE PRIAIDADAL | 120 |
| FAPGGSPFVA PLVAGNQLTS GGFASWAPLP YRGRLRITTE RRAGFYAAHY ETFPPDWNVD | 180 |
| SYVARTEDAK LVDAFEATGP SALPLDDVAL DTTVTGAGEI DVLRFEPTTP LDADPRAARL | 240 |
| RITFDRAAKP QVDVPLPAFF GSGLGDATIR SVAWTMQPGL WESRLPMPFW ESYRITVTGL | 300 |
| SGKLRAHVSP SKRTRETAGY LEAHWNEARP TSTGSDFVYV DTTGTGKLIG TVLAVEPLAP | 360 |
| YGETVNKQWW EGDLRSSADG RRTPSIHGTG HEDDHLGGWS NEFLSRPFTQ PMQGCPKTEL | 420 |
| LDTNGQYNAN ASMYRLWPGI TFTNALRHTT EHGAGNGRSL NYSSVAFLYR RPEPSTTRTD | 480 |
| AFDVTDREAA AAHAYAAGAP RIEAITSAFE GEDASALSSD THHYDSAVSF ELAVDPKNDG | 540 |
| VVLRRLFDAT HGGERASIEV DGSVVATIYV AEYDPDRRWM ERDVFLPPQI TKGKTRLHVR | 600 |
| LVPEGDFNAA RFEAWSVKSP F | 621 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.