CAZyme3D

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Entry ID

Information for CAZyme ID: AKR17307.1

Basic Information

GenBank IDAKR17307.1
FamilyCBM14
Sequence Length838
UniProt IDA0A162GTZ4(100,100)Download
Average pLDDT?79.90
CAZy50 ID23910
CAZy50 RepYes, AKR17307.1
Structure ClusterSC_CBM14_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1675866
KingdomViruses
Phylum
ClassNaldaviricetes
OrderLefavirales
FamilyBaculoviridae
GenusAlphabaculovirus
SpeciesAlphabaculovirus urprotei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIVPLVLLI  IVLTLIFSIF  YLSIYNEFNE  NEYNNKLQIL  VNYMRRTNAE  HPTPDYIGFV60
SSVDKHLYTV  TYFDTTTLQT  INKTTHDDRI  ETFNFLTQKF  ESVKNFTDES  RIIADINDSN120
KFLVRGDDNE  QYIQMQCEDN  EYFDKQQLDC  VDRSPCENKQ  AGNYALTANM  LDKLVLLHRS180
ADRLNNDLTL  THPTLYLRCL  DGGSHVIEEC  PASYLFDSAT  KLCVQIEQCE  NKPNGYVLNY240
FPEHLTQTQF  YMCQNNTTVL  STCDDGEVFD  RRLMTCIKSG  PCELNGAGHT  FITADTPPNE300
FYLCVSNTQF  ERQVCLVRKL  ENNQYVCAGS  ASCSHFAQGT  GTQHNFFEDD  VWKFYTGSLT360
CQNFEVVNNV  SCDTQNIVAN  KIFDNRFTIN  VHMPQEVYDV  DTKSCVAFNL  KHVEIKNKIF420
SINNLPNDYR  VNFTTSMVGN  TTNVKQIITN  DTLSGSVTYA  RDTNSVGINP  INGQTLECYG480
EHLYDIFNGR  QLNICDTKHQ  LLERRALNES  EYIKSIPDPI  KIDSDIDYKS  ICSNRFDYDD540
VNFVEFDHFL  TRIFTNILHS  DVCIYIFGKI  DESYTTIAHK  YTTLTPQIYY  DREKRPKYIE600
VYGANIQKNN  STIFRMYENI  LQKNRFSKNK  IDFDHNKIDF  KIDFNEIDFN  EIDSNKIDIN660
PMFEPFVKTA  DLQPKFTFFN  NDETKNEGVE  NSPLSVEKKF  VSYACFYALP  THKLTSCVIE720
HEHIKDKIKQ  MRSDAIVDER  CANARNLSYV  INSYVYIGDG  VGCQCEFTND  ATLHIKSVTT780
GLKFDNIATQ  SNDGNKYNPF  VHVLDNTYFM  ACPPDLVTDD  FQCDTKDDEL  YVMENKQQ838

Predicted 3D structure by AlphaFold2 with pLDDT = 79.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSIVPLVLLI  IVLTLIFSIF  YLSIYNEFNE  NEYNNKLQIL  VNYMRRTNAE  HPTPDYIGFV60
SSVDKHLYTV  TYFDTTTLQT  INKTTHDDRI  ETFNFLTQKF  ESVKNFTDES  RIIADINDSN120
KFLVRGDDNE  QYIQMQCEDN  EYFDKQQLDC  VDRSPCENKQ  AGNYALTANM  LDKLVLLHRS180
ADRLNNDLTL  THPTLYLRCL  DGGSHVIEEC  PASYLFDSAT  KLCVQIEQCE  NKPNGYVLNY240
FPEHLTQTQF  YMCQNNTTVL  STCDDGEVFD  RRLMTCIKSG  PCELNGAGHT  FITADTPPNE300
FYLCVSNTQF  ERQVCLVRKL  ENNQYVCAGS  ASCSHFAQGT  GTQHNFFEDD  VWKFYTGSLT360
CQNFEVVNNV  SCDTQNIVAN  KIFDNRFTIN  VHMPQEVYDV  DTKSCVAFNL  KHVEIKNKIF420
SINNLPNDYR  VNFTTSMVGN  TTNVKQIITN  DTLSGSVTYA  RDTNSVGINP  INGQTLECYG480
EHLYDIFNGR  QLNICDTKHQ  LLERRALNES  EYIKSIPDPI  KIDSDIDYKS  ICSNRFDYDD540
VNFVEFDHFL  TRIFTNILHS  DVCIYIFGKI  DESYTTIAHK  YTTLTPQIYY  DREKRPKYIE600
VYGANIQKNN  STIFRMYENI  LQKNRFSKNK  IDFDHNKIDF  KIDFNEIDFN  EIDSNKIDIN660
PMFEPFVKTA  DLQPKFTFFN  NDETKNEGVE  NSPLSVEKKF  VSYACFYALP  THKLTSCVIE720
HEHIKDKIKQ  MRSDAIVDER  CANARNLSYV  INSYVYIGDG  VGCQCEFTND  ATLHIKSVTT780
GLKFDNIATQ  SNDGNKYNPF  VHVLDNTYFM  ACPPDLVTDD  FQCDTKDDEL  YVMENKQQ838

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM14(194-229)+CBM14(229-277)

MSIVPLVLLI  IVLTLIFSIF  YLSIYNEFNE  NEYNNKLQIL  VNYMRRTNAE  HPTPDYIGFV60
SSVDKHLYTV  TYFDTTTLQT  INKTTHDDRI  ETFNFLTQKF  ESVKNFTDES  RIIADINDSN120
KFLVRGDDNE  QYIQMQCEDN  EYFDKQQLDC  VDRSPCENKQ  AGNYALTANM  LDKLVLLHRS180
ADRLNNDLTL  THPTLYLRCL  DGGSHVIEEC  PASYLFDSAT  KLCVQIEQCE  NKPNGYVLNY240
FPEHLTQTQF  YMCQNNTTVL  STCDDGEVFD  RRLMTCIKSG  PCELNGAGHT  FITADTPPNE300
FYLCVSNTQF  ERQVCLVRKL  ENNQYVCAGS  ASCSHFAQGT  GTQHNFFEDD  VWKFYTGSLT360
CQNFEVVNNV  SCDTQNIVAN  KIFDNRFTIN  VHMPQEVYDV  DTKSCVAFNL  KHVEIKNKIF420
SINNLPNDYR  VNFTTSMVGN  TTNVKQIITN  DTLSGSVTYA  RDTNSVGINP  INGQTLECYG480
EHLYDIFNGR  QLNICDTKHQ  LLERRALNES  EYIKSIPDPI  KIDSDIDYKS  ICSNRFDYDD540
VNFVEFDHFL  TRIFTNILHS  DVCIYIFGKI  DESYTTIAHK  YTTLTPQIYY  DREKRPKYIE600
VYGANIQKNN  STIFRMYENI  LQKNRFSKNK  IDFDHNKIDF  KIDFNEIDFN  EIDSNKIDIN660
PMFEPFVKTA  DLQPKFTFFN  NDETKNEGVE  NSPLSVEKKF  VSYACFYALP  THKLTSCVIE720
HEHIKDKIKQ  MRSDAIVDER  CANARNLSYV  INSYVYIGDG  VGCQCEFTND  ATLHIKSVTT780
GLKFDNIATQ  SNDGNKYNPF  VHVLDNTYFM  ACPPDLVTDD  FQCDTKDDEL  YVMENKQQ838

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help