CAZyme3D

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Entry ID

Information for CAZyme ID: AKP45383.1

Basic Information

GenBank IDAKP45383.1
FamilyCBM20, CBM25, GH119
Sequence Length1267
UniProt IDA0A0H4NYZ6(100,100)Download
Average pLDDT?88.13
CAZy50 ID2829
CAZy50 RepNo, QMV42548.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1679164
KingdomBacteria
PhylumMyxococcota
ClassMyxococcia
OrderMyxococcales
FamilyArchangiaceae
GenusCystobacter
SpeciesCystobacter sp. Cbv34

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHRVKPLIGP  VLSALLLCAL  PARAQIAAAH  VYHNHMPNFW  AYYDLGQYAS  TPTGGPIRYM60
YDAQVINLKK  NPPSNYTYYL  PSGAPMPHDD  LVTYYSHNAK  TGAYLYWPPS  VASDMKTNAP120
TGQVHVTMSG  AVVNNVQDLV  TLKNVPGYDN  PNWGASWKDR  YSALLTPAGN  RTLDLIHFTG180
HHSMGPLVGP  DYFLKDLIYQ  SATLAQPYFL  GGSFQSSKGF  FPTELGFSER  LIPTLSKLGV240
QWAVIGDNHF  SRTLKDYPYL  NDPGSDTLVS  PPNRADLQNT  SSVGSWVSAQ  MAHEQQVIKN300
KYPFASTPHW  VRYVDPATGA  ESRVVGIPVN  QNGSWLEGWE  GEATVDVVNL  KSFEGLVPQR360
QFFVIAHDGD  NSSGRAGSDS  TWYNGRSVTC  ANGVQCVGIS  EYLVHHTPAS  TDVVHVQDGS420
WVDTRDSSSD  PQWHHWKLPF  GIWKGQFPAF  NAATGLNLSP  KTNLSGVQEG  MTVSLEHGWH480
YLERNFALLQ  AALNYAKTAE  QIWLDAHPNH  WSPTTAIDKQ  ITHTGNQLNP  WMMSFPVKGD540
VNNDWAGGAN  PAELAWYFLL  PAMDSGFGYY  DENQDDNVKP  TLSFNQSLYF  SKPYVQQRIA600
QDKTGPSVWW  AQRWPYNPGS  ANTDKSEGWT  LHFFNNHFAL  YTYAYDASGI  SSIKARVRVH660
THKSIDPLDN  THKVYDPAAR  KAAGVPNIDP  ARVGAWVDYP  LTRRDLKPVM  NGVSWQPAYL720
PVMAKVPAQE  IGDLYYVYLG  NYRDQLLDYY  IEATDSRGNI  TRGEIQSVYV  GSGRYNLVGG780
KYIEDPNGTV  QGTHPFLVVD  TTAPSVPSGL  TAKAKTDRSV  TLSWSAASDN  VAVSGYDVFR840
DGTQVGSSTS  TAYTDSGLSP  STQYSYTVRA  RDAAGNASAQ  STALSVATLT  PDTTPPSVPS900
GLTASGTTSS  SVALAWTAST  DNYGVANYEV  LRNGTQVASV  TGTTYSDTGL  SPSTTYSYTV960
RARDAAGNVS  SPSTALSVTT  QTGNSATVYY  FNNNFALKYI  HFRIGGGTWT  TVPGNVMATS1020
EVPGYAKYTV  NLGAATQLEC  VFNDGKGTWD  NNKGNNYLLP  AGTSTVKDGV  VSSGAPALDT1080
TAPSVPSGLT  AASKTSSSVS  LSWSASTDAS  GIAGYDVYRD  GSLVGSPVST  SYTDSDLSAG1140
TTYRYTVRAR  DTAGNASAQS  TALSVTTSTS  SATSVTFNVT  ASTVVGQNVY  LVGNHAALGN1200
WNTGAAILLS  PASYPKWSVT  LSLPGSTALE  YKYIKKDGSG  NVTWESGANR  STTIPASGTA1260
TLNDTWK1267

Predicted 3D structure by AlphaFold2 with pLDDT = 88.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH119(11-888)

MHRVKPLIGP  VLSALLLCAL  PARAQIAAAH  VYHNHMPNFW  AYYDLGQYAS  TPTGGPIRYM60
YDAQVINLKK  NPPSNYTYYL  PSGAPMPHDD  LVTYYSHNAK  TGAYLYWPPS  VASDMKTNAP120
TGQVHVTMSG  AVVNNVQDLV  TLKNVPGYDN  PNWGASWKDR  YSALLTPAGN  RTLDLIHFTG180
HHSMGPLVGP  DYFLKDLIYQ  SATLAQPYFL  GGSFQSSKGF  FPTELGFSER  LIPTLSKLGV240
QWAVIGDNHF  SRTLKDYPYL  NDPGSDTLVS  PPNRADLQNT  SSVGSWVSAQ  MAHEQQVIKN300
KYPFASTPHW  VRYVDPATGA  ESRVVGIPVN  QNGSWLEGWE  GEATVDVVNL  KSFEGLVPQR360
QFFVIAHDGD  NSSGRAGSDS  TWYNGRSVTC  ANGVQCVGIS  EYLVHHTPAS  TDVVHVQDGS420
WVDTRDSSSD  PQWHHWKLPF  GIWKGQFPAF  NAATGLNLSP  KTNLSGVQEG  MTVSLEHGWH480
YLERNFALLQ  AALNYAKTAE  QIWLDAHPNH  WSPTTAIDKQ  ITHTGNQLNP  WMMSFPVKGD540
VNNDWAGGAN  PAELAWYFLL  PAMDSGFGYY  DENQDDNVKP  TLSFNQSLYF  SKPYVQQRIA600
QDKTGPSVWW  AQRWPYNPGS  ANTDKSEGWT  LHFFNNHFAL  YTYAYDASGI  SSIKARVRVH660
THKSIDPLDN  THKVYDPAAR  KAAGVPNIDP  ARVGAWVDYP  LTRRDLKPVM  NGVSWQPAYL720
PVMAKVPAQE  IGDLYYVYLG  NYRDQLLDYY  IEATDSRGNI  TRGEIQSVYV  GSGRYNLVGG780
KYIEDPNGTV  QGTHPFLVVD  TTAPSVPSGL  TAKAKTDRSV  TLSWSAASDN  VAVSGYDVFR840
DGTQVGSSTS  TAYTDSGLSP  STQYSYTVRA  RDAAGNASAQ  STALSVATLT  PDTTPPSVPS900
GLTASGTTSS  SVALAWTAST  DNYGVANYEV  LRNGTQVASV  TGTTYSDTGL  SPSTTYSYTV960
RARDAAGNVS  SPSTALSVTT  QTGNSATVYY  FNNNFALKYI  HFRIGGGTWT  TVPGNVMATS1020
EVPGYAKYTV  NLGAATQLEC  VFNDGKGTWD  NNKGNNYLLP  AGTSTVKDGV  VSSGAPALDT1080
TAPSVPSGLT  AASKTSSSVS  LSWSASTDAS  GIAGYDVYRD  GSLVGSPVST  SYTDSDLSAG1140
TTYRYTVRAR  DTAGNASAQS  TALSVTTSTS  SATSVTFNVT  ASTVVGQNVY  LVGNHAALGN1200
WNTGAAILLS  PASYPKWSVT  LSLPGSTALE  YKYIKKDGSG  NVTWESGANR  STTIPASGTA1260
TLNDTWK1267

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help