CAZyme3D

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Entry ID

Information for CAZyme ID: AKH67966.1

Basic Information

GenBank IDAKH67966.1
FamilyGH178
Sequence Length356
UniProt IDA0A0F7LZ21(100,100)Download
Average pLDDT?95.02
CAZy50 ID116076
CAZy50 RepNo, AFU99985.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1620392
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilySpongiibacteraceae
GenusSpongiibacter
SpeciesSpongiibacter sp. IMCC21906

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSGLFLSRGL  FPVDFFRPCV  EFLLRSQQSN  GAIPWFDGGH  TDPWDHVEAA  MGLSIGGEWS60
AAEKAYRWLQ  SEQLSDGSWW  SSYGGTEPVA  EPRRETNFVA  YIATGLWHHY  LVTGNREFLL120
EMWPCLYAAA  EFVLSLQTSH  GDIHWAVDAN  GEAMEDALRT  GCSSIYKSLE  CAFNISVVLD180
RPQTSWRSAR  ETLAKALLHK  PQRFDRTWES  KSRFSMDWFY  PVLTGVIPAS  LAGRHLQRRW240
HDFVEPELGC  RCVADQPWVT  VAESCELCLA  LLAAGDHARA  VQLFSWLQQW  RGDEGEYWTG300
YQFVDELLWP  EERPTWTAAA  ILLAADALTE  YTNACRLFTE  VRLLDVDLSR  VKQLSG356

Predicted 3D structure by AlphaFold2 with pLDDT = 95.02 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH78(47-291)

MSGLFLSRGL  FPVDFFRPCV  EFLLRSQQSN  GAIPWFDGGH  TDPWDHVEAA  MGLSIGGEWS60
AAEKAYRWLQ  SEQLSDGSWW  SSYGGTEPVA  EPRRETNFVA  YIATGLWHHY  LVTGNREFLL120
EMWPCLYAAA  EFVLSLQTSH  GDIHWAVDAN  GEAMEDALRT  GCSSIYKSLE  CAFNISVVLD180
RPQTSWRSAR  ETLAKALLHK  PQRFDRTWES  KSRFSMDWFY  PVLTGVIPAS  LAGRHLQRRW240
HDFVEPELGC  RCVADQPWVT  VAESCELCLA  LLAAGDHARA  VQLFSWLQQW  RGDEGEYWTG300
YQFVDELLWP  EERPTWTAAA  ILLAADALTE  YTNACRLFTE  VRLLDVDLSR  VKQLSG356

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help