CAZyme3D

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Entry ID

Information for CAZyme ID: AKG33581.1

Basic Information

GenBank IDAKG33581.1
FamilyCBM35, GH66
Sequence Length986
UniProt IDA0A0F7CGK5(100,100)Download
Average pLDDT?88.69
CAZy50 ID14983
CAZy50 RepYes, AKG33581.1
Structure ClusterSC_GH66_clus1
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1333534
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus durus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTKKAIAYF  CMLLMLAQTG  TIGYGWAGTA  SAAAAAADTP  PEHRITKMVP  SKARFAPGES60
AELLLTLDQS  ADWSGKLHLQ  IYQLNNLVAE  GVKDLTVQKD  GSAGLKVDWT  PPTADFKGYM120
AKAWIEGAAA  DDYVTAAVDV  SSDWTHFPRY  GYVADFPKET  AEESDAKLQE  LSQEYYLNAY180
QFYDWMWRHD  VSVYSKTDKN  GKPLLDANGR  FITAPVDENS  SYTDLLGRLL  YPLTVKQSVS240
AAQKYGSAAM  AYEMNYAARE  NYQDFGVKPE  WGLYNKTATE  SRTPQKDQVG  FNFDGVKPHP300
TALYLQDPGN  PQWQSYITQQ  YVRAINDYGF  DGIHLDQWGT  NDNDYLLGHD  GTKRYYAKDF360
DKIINATKDA  IKANNANKSH  VTFNMVGGNK  GYSAVPNPNT  KTDFDYSEIW  QDQDKYKDLQ420
QVVNETREAD  GGKAMVIAGY  MNYKQAAGVQ  YNGSEAKAVP  PLVLDKDTIL  DFGHLNDTVS480
FDVDVPQSGE  TSLIYTYSNG  GTGTSRAVYI  DGTRAADLNG  EPARIYFSPT  DNSSSYSQDG540
YFIVPHLNAG  KHRVTLKMDE  ESGNGSVNIR  GLTLGYFNEP  SLRLMDAGLA  ALGATHIEIG600
TAENFEEGPN  MLAHEYYPNR  SKKLLESTKE  TMKEYYKFSA  AYENLLFDSK  ADLTASVEVE660
AGGGRLATSS  SGAQDTIWTT  VRKNRSNAGF  ERYDVLHLIN  LLNNDDNWRN  AANEPVLQNN720
LKVTYDIGIS  KEAAPNLKVY  AASPDTHHGM  PEELRYTWNG  TRLTIDLPSL  KYWTMIYIDK780
ADSAGDTASA  GPSHLSSFAM  LANDKSYFDV  APSHWAYQAI  TSLTAKHVIN  GMTDTTFVPS840
AKVTRAQFAA  LLARALHLQS  TGQAPFQDVK  AGAWYSSGVA  AAYEAGIIAG  RGAGKFAPNA900
AITRQEMAVM  LAKALERADG  GGAASGRELT  FRDRGHIAAW  ALPAVQSVIG  TGLMAGQADG960
RFAPAQTATR  AEAAQAIANL  LNKTAN986

Predicted 3D structure by AlphaFold2 with pLDDT = 88.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRTKKAIAYF  CMLLMLAQTG  TIGYGWAGTA  SAAAAAADTP  PEHRITKMVP  SKARFAPGES60
AELLLTLDQS  ADWSGKLHLQ  IYQLNNLVAE  GVKDLTVQKD  GSAGLKVDWT  PPTADFKGYM120
AKAWIEGAAA  DDYVTAAVDV  SSDWTHFPRY  GYVADFPKET  AEESDAKLQE  LSQEYYLNAY180
QFYDWMWRHD  VSVYSKTDKN  GKPLLDANGR  FITAPVDENS  SYTDLLGRLL  YPLTVKQSVS240
AAQKYGSAAM  AYEMNYAARE  NYQDFGVKPE  WGLYNKTATE  SRTPQKDQVG  FNFDGVKPHP300
TALYLQDPGN  PQWQSYITQQ  YVRAINDYGF  DGIHLDQWGT  NDNDYLLGHD  GTKRYYAKDF360
DKIINATKDA  IKANNANKSH  VTFNMVGGNK  GYSAVPNPNT  KTDFDYSEIW  QDQDKYKDLQ420
QVVNETREAD  GGKAMVIAGY  MNYKQAAGVQ  YNGSEAKAVP  PLVLDKDTIL  DFGHLNDTVS480
FDVDVPQSGE  TSLIYTYSNG  GTGTSRAVYI  DGTRAADLNG  EPARIYFSPT  DNSSSYSQDG540
YFIVPHLNAG  KHRVTLKMDE  ESGNGSVNIR  GLTLGYFNEP  SLRLMDAGLA  ALGATHIEIG600
TAENFEEGPN  MLAHEYYPNR  SKKLLESTKE  TMKEYYKFSA  AYENLLFDSK  ADLTASVEVE660
AGGGRLATSS  SGAQDTIWTT  VRKNRSNAGF  ERYDVLHLIN  LLNNDDNWRN  AANEPVLQNN720
LKVTYDIGIS  KEAAPNLKVY  AASPDTHHGM  PEELRYTWNG  TRLTIDLPSL  KYWTMIYIDK780
ADSAGDTASA  GPSHLSSFAM  LANDKSYFDV  APSHWAYQAI  TSLTAKHVIN  GMTDTTFVPS840
AKVTRAQFAA  LLARALHLQS  TGQAPFQDVK  AGAWYSSGVA  AAYEAGIIAG  RGAGKFAPNA900
AITRQEMAVM  LAKALERADG  GGAASGRELT  FRDRGHIAAW  ALPAVQSVIG  TGLMAGQADG960
RFAPAQTATR  AEAAQAIANL  LNKTAN986

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH66(48-454)+CBM35(471-573)+SLH(809-846)+SLH(866-906)+SLH(931-973)

MRTKKAIAYF  CMLLMLAQTG  TIGYGWAGTA  SAAAAAADTP  PEHRITKMVP  SKARFAPGES60
AELLLTLDQS  ADWSGKLHLQ  IYQLNNLVAE  GVKDLTVQKD  GSAGLKVDWT  PPTADFKGYM120
AKAWIEGAAA  DDYVTAAVDV  SSDWTHFPRY  GYVADFPKET  AEESDAKLQE  LSQEYYLNAY180
QFYDWMWRHD  VSVYSKTDKN  GKPLLDANGR  FITAPVDENS  SYTDLLGRLL  YPLTVKQSVS240
AAQKYGSAAM  AYEMNYAARE  NYQDFGVKPE  WGLYNKTATE  SRTPQKDQVG  FNFDGVKPHP300
TALYLQDPGN  PQWQSYITQQ  YVRAINDYGF  DGIHLDQWGT  NDNDYLLGHD  GTKRYYAKDF360
DKIINATKDA  IKANNANKSH  VTFNMVGGNK  GYSAVPNPNT  KTDFDYSEIW  QDQDKYKDLQ420
QVVNETREAD  GGKAMVIAGY  MNYKQAAGVQ  YNGSEAKAVP  PLVLDKDTIL  DFGHLNDTVS480
FDVDVPQSGE  TSLIYTYSNG  GTGTSRAVYI  DGTRAADLNG  EPARIYFSPT  DNSSSYSQDG540
YFIVPHLNAG  KHRVTLKMDE  ESGNGSVNIR  GLTLGYFNEP  SLRLMDAGLA  ALGATHIEIG600
TAENFEEGPN  MLAHEYYPNR  SKKLLESTKE  TMKEYYKFSA  AYENLLFDSK  ADLTASVEVE660
AGGGRLATSS  SGAQDTIWTT  VRKNRSNAGF  ERYDVLHLIN  LLNNDDNWRN  AANEPVLQNN720
LKVTYDIGIS  KEAAPNLKVY  AASPDTHHGM  PEELRYTWNG  TRLTIDLPSL  KYWTMIYIDK780
ADSAGDTASA  GPSHLSSFAM  LANDKSYFDV  APSHWAYQAI  TSLTAKHVIN  GMTDTTFVPS840
AKVTRAQFAA  LLARALHLQS  TGQAPFQDVK  AGAWYSSGVA  AAYEAGIIAG  RGAGKFAPNA900
AITRQEMAVM  LAKALERADG  GGAASGRELT  FRDRGHIAAW  ALPAVQSVIG  TGLMAGQADG960
RFAPAQTATR  AEAAQAIANL  LNKTAN986

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help