CAZyme3D

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Entry ID

Information for CAZyme ID: AKC43905.1

Basic Information

GenBank IDAKC43905.1
FamilyGH34
Sequence Length447
UniProt IDA0A1W5INC2(100,100)Download
Average pLDDT?77.84
CAZy50 ID80899
CAZy50 RepYes, AKC43905.1
Structure ClusterSC_GH34_clus4
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1641314
KingdomViruses
PhylumNegarnaviricota
ClassInsthoviricetes
OrderArticulavirales
FamilyOrthomyxoviridae
GenusAlphainfluenzavirus
SpeciesAlphainfluenzavirus influenzae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSFQTSTCLL  IVSLLCGILT  VCLQVLLPFI  LIWTNTEPNY  SCECPAPNIS  LSCPNGTSVT60
YDSKNITENS  FYSSTTNYLS  PVIATPLVLG  ENLCSINGWV  PTYRGEGTTG  KIPDEQMLTR120
QNFVSCSDKE  CRRFFVSMGY  GTTTNFADLI  VSEQMNVYSV  KLGDPPTPDK  LKFEAVGWSA180
SSCHDGFQWT  VLSVAGDGFV  SILYGGIITD  TIHPTNGGPL  RTQASSCICN  DGTCYTIIAD240
GTTYTASSHR  LYRLINGTSA  GWKALDTTGF  NFEFPTCYYT  SGKVKCTGTN  LWNDAKRPFL300
EFDQSFTYTF  KEPCLGFLGD  TPRGIDTTNY  CDKTTTEGEG  GIQGFMIEGS  NSWIGRIINP360
GSKKGFEIYK  FLGTLFSVQT  VGNRNYQLLS  NSTIGRSGLY  QPAYESRDCQ  ELCFWIEITA420
TTKAGLSSND  LITFCGTGGS  MPDVNWG447

Predicted 3D structure by AlphaFold2 with pLDDT = 77.84 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSFQTSTCLL  IVSLLCGILT  VCLQVLLPFI  LIWTNTEPNY  SCECPAPNIS  LSCPNGTSVT60
YDSKNITENS  FYSSTTNYLS  PVIATPLVLG  ENLCSINGWV  PTYRGEGTTG  KIPDEQMLTR120
QNFVSCSDKE  CRRFFVSMGY  GTTTNFADLI  VSEQMNVYSV  KLGDPPTPDK  LKFEAVGWSA180
SSCHDGFQWT  VLSVAGDGFV  SILYGGIITD  TIHPTNGGPL  RTQASSCICN  DGTCYTIIAD240
GTTYTASSHR  LYRLINGTSA  GWKALDTTGF  NFEFPTCYYT  SGKVKCTGTN  LWNDAKRPFL300
EFDQSFTYTF  KEPCLGFLGD  TPRGIDTTNY  CDKTTTEGEG  GIQGFMIEGS  NSWIGRIINP360
GSKKGFEIYK  FLGTLFSVQT  VGNRNYQLLS  NSTIGRSGLY  QPAYESRDCQ  ELCFWIEITA420
TTKAGLSSND  LITFCGTGGS  MPDVNWG447

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH34(12-446)

MSFQTSTCLL  IVSLLCGILT  VCLQVLLPFI  LIWTNTEPNY  SCECPAPNIS  LSCPNGTSVT60
YDSKNITENS  FYSSTTNYLS  PVIATPLVLG  ENLCSINGWV  PTYRGEGTTG  KIPDEQMLTR120
QNFVSCSDKE  CRRFFVSMGY  GTTTNFADLI  VSEQMNVYSV  KLGDPPTPDK  LKFEAVGWSA180
SSCHDGFQWT  VLSVAGDGFV  SILYGGIITD  TIHPTNGGPL  RTQASSCICN  DGTCYTIIAD240
GTTYTASSHR  LYRLINGTSA  GWKALDTTGF  NFEFPTCYYT  SGKVKCTGTN  LWNDAKRPFL300
EFDQSFTYTF  KEPCLGFLGD  TPRGIDTTNY  CDKTTTEGEG  GIQGFMIEGS  NSWIGRIINP360
GSKKGFEIYK  FLGTLFSVQT  VGNRNYQLLS  NSTIGRSGLY  QPAYESRDCQ  ELCFWIEITA420
TTKAGLSSND  LITFCGTGGS  MPDVNWG447

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help