CAZyme3D

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Entry ID

Information for CAZyme ID: AJI75565.1

Basic Information

GenBank IDAJI75565.1
FamilyCBM5, CBM73, GH18
Sequence Length800
UniProt IDA0A0B6ER15(100,100)Download
Average pLDDT?86.68
CAZy50 ID24899
CAZy50 RepNo, AEI36637.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID539329
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyFrancisellaceae
GenusFrancisella
SpeciesFrancisella philomiragia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKNKLKLTPA  MLCALMGVSS  FSIANATDAW  STSKVSSYVA  GTQVTDGGKT  YQCKEWPASG60
WCQNTAYKPS  GIYGADAWDV  VGDSPVDPVD  PVDPVDPVDP  VDPVNPVDPV  NPSSTEWDSN120
KTYVKGDTVT  YNGDTFTAKW  WTQGETPNKE  SKWGVWEYNG  EASQSKGTVS  IVLPAKPDFI180
ANGKLADVQI  LKDGKIVAEV  NNANWGSTKN  IEVEVGESSD  LTINVPAIDG  ATGAANPAAF240
TLAKNSSKTV  NVEYTASNPA  EQGSITINPQ  ADVSGNPITS  YSLTDSNGNV  VASGDLEINK300
VTTLEKISAS  EDGVNYTLTI  GSFISGGFNY  TPTGTYPVTV  YNFNTSNVDV  TFTKQAIPTE360
NVRISVDGLP  ENKSTTLTLS  NKNGDSEKVS  VDSNSTISLD  IPKDGTVWKA  SVDAISGFKA420
VISPASFTAN  NDAQNINVNF  EQQAPIEAGK  KIMGYWENWK  PGLISGDYKG  SAEDVAPYTH480
ILYSFLTLDS  SPNPENPANK  AWSSGHINES  MAGADVLSVM  GNYENAWDNN  SNWQRVRIDS540
LIDLTHANGG  KFIWAIGGWS  DLQQTIGDSQ  IDAFVNQVVE  LLKLGGDGVD  FDWEHLSQLA600
DGSPNPNKDQ  QLTTLAKTLK  TLRERLDAEG  MSDKQIGYTT  RFNAFFESSK  AHGFANDFNS660
DGEGIAIDKW  LKDNGSSLDQ  VVNWVNIMAY  DVGPNDMPNG  KTWTKDVYTD  MLKSFSEYVN720
PSLVVLGFEP  GGQAASGEWE  GLTLDKEMID  YVSDNNYGGS  MFWAVNQVAM  NTASTYYPNV780
VTGENVNELA  SYSKEAFAEE  800

Predicted 3D structure by AlphaFold2 with pLDDT = 86.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM73(35-79)+CBM5(116-156)+GH18(450-729)

MKNKLKLTPA  MLCALMGVSS  FSIANATDAW  STSKVSSYVA  GTQVTDGGKT  YQCKEWPASG60
WCQNTAYKPS  GIYGADAWDV  VGDSPVDPVD  PVDPVDPVDP  VDPVNPVDPV  NPSSTEWDSN120
KTYVKGDTVT  YNGDTFTAKW  WTQGETPNKE  SKWGVWEYNG  EASQSKGTVS  IVLPAKPDFI180
ANGKLADVQI  LKDGKIVAEV  NNANWGSTKN  IEVEVGESSD  LTINVPAIDG  ATGAANPAAF240
TLAKNSSKTV  NVEYTASNPA  EQGSITINPQ  ADVSGNPITS  YSLTDSNGNV  VASGDLEINK300
VTTLEKISAS  EDGVNYTLTI  GSFISGGFNY  TPTGTYPVTV  YNFNTSNVDV  TFTKQAIPTE360
NVRISVDGLP  ENKSTTLTLS  NKNGDSEKVS  VDSNSTISLD  IPKDGTVWKA  SVDAISGFKA420
VISPASFTAN  NDAQNINVNF  EQQAPIEAGK  KIMGYWENWK  PGLISGDYKG  SAEDVAPYTH480
ILYSFLTLDS  SPNPENPANK  AWSSGHINES  MAGADVLSVM  GNYENAWDNN  SNWQRVRIDS540
LIDLTHANGG  KFIWAIGGWS  DLQQTIGDSQ  IDAFVNQVVE  LLKLGGDGVD  FDWEHLSQLA600
DGSPNPNKDQ  QLTTLAKTLK  TLRERLDAEG  MSDKQIGYTT  RFNAFFESSK  AHGFANDFNS660
DGEGIAIDKW  LKDNGSSLDQ  VVNWVNIMAY  DVGPNDMPNG  KTWTKDVYTD  MLKSFSEYVN720
PSLVVLGFEP  GGQAASGEWE  GLTLDKEMID  YVSDNNYGGS  MFWAVNQVAM  NTASTYYPNV780
VTGENVNELA  SYSKEAFAEE  800

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help