Information for CAZyme ID: AJD01219.1
Basic Information
| GenBank ID | AJD01219.1 |
| Family | GT107 |
| Sequence Length | 661 |
| UniProt ID | A0A0A8HTI0(100,100) |
| Average pLDDT? | 90.30 |
| CAZy50 ID | 12416 |
| CAZy50 Rep | No, AWI34020.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 1388749 |
| Kingdom | Bacteria |
| Phylum | Campylobacterota |
| Class | Epsilonproteobacteria |
| Order | Campylobacterales |
| Family | Campylobacteraceae |
| Genus | Campylobacter |
| Species | Campylobacter lari |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MLNGYCFYIN NFIQIFYKKN FTGWGRKRTG RWASFLYKKF NGSLILLEDG FLRSLNLGVE | 60 |
| KSPSFSIVKD DVGIYYDATT PSKLENILNT YEFSAEELEQ AKKAIEFIKK EKLSKYNNNL | 120 |
| CIPKELFSAN EKRVLIITQV ANDASLKFGL ADNFLTQDII NEAIKENPNA KIYIKIHPDV | 180 |
| LGGKKQSDFH VQDLPNKCVI IKENYNPVEL LSHFKKVYTK TSGMGFEALI LGCECVCYGM | 240 |
| PFYAGWGLTQ DKQACKRRLK KRTLEEVFYA AYVLYSEYFN PYLNQKSDIF DTIHTLAKYK | 300 |
| KIEQANSNTL YFLGFSKWKR EFVRPFFKAK NNKIIFLNSP GELYKVNLNP DDKIFIWGKK | 360 |
| YDKDLLAKDF KNTIFLVEDG FLRSVFLGSD LTRPFSLIVD SKGLYVDPSK PSDLEDILQN | 420 |
| HIFDESLKQR AKKLIITITH NKFSKYNGLK HEKLNFNTNK KIILIPAQVE DDVSMILGGA | 480 |
| GFDTLKLLQS VRKANENAFI VFKPHPDVLS GNRKGLKDKS IILKYCDEII ENVSIDSAIN | 540 |
| ACDEVHTITS TSGFDALLRG KKVVVYGKPF YAGWGLTQDL HKIPRRTRLL SLEELVAGVL | 600 |
| ILYPRYIHPK SKNLCEVELT LDIMLKMQKD YFSKFYLRWF MDIRIYILRK IRRLIEFILI | 660 |
| R | 661 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.30 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GT107(18-298)+GT107(275-632)
| MLNGYCFYIN NFIQIFYKKN FTGWGRKRTG RWASFLYKKF NGSLILLEDG FLRSLNLGVE | 60 |
| KSPSFSIVKD DVGIYYDATT PSKLENILNT YEFSAEELEQ AKKAIEFIKK EKLSKYNNNL | 120 |
| CIPKELFSAN EKRVLIITQV ANDASLKFGL ADNFLTQDII NEAIKENPNA KIYIKIHPDV | 180 |
| LGGKKQSDFH VQDLPNKCVI IKENYNPVEL LSHFKKVYTK TSGMGFEALI LGCECVCYGM | 240 |
| PFYAGWGLTQ DKQACKRRLK KRTLEEVFYA AYVLYSEYFN PYLNQKSDIF DTIHTLAKYK | 300 |
| KIEQANSNTL YFLGFSKWKR EFVRPFFKAK NNKIIFLNSP GELYKVNLNP DDKIFIWGKK | 360 |
| YDKDLLAKDF KNTIFLVEDG FLRSVFLGSD LTRPFSLIVD SKGLYVDPSK PSDLEDILQN | 420 |
| HIFDESLKQR AKKLIITITH NKFSKYNGLK HEKLNFNTNK KIILIPAQVE DDVSMILGGA | 480 |
| GFDTLKLLQS VRKANENAFI VFKPHPDVLS GNRKGLKDKS IILKYCDEII ENVSIDSAIN | 540 |
| ACDEVHTITS TSGFDALLRG KKVVVYGKPF YAGWGLTQDL HKIPRRTRLL SLEELVAGVL | 600 |
| ILYPRYIHPK SKNLCEVELT LDIMLKMQKD YFSKFYLRWF MDIRIYILRK IRRLIEFILI | 660 |
| R | 661 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.