CAZyme3D

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Entry ID

Information for CAZyme ID: AJA44145.1

Basic Information

GenBank IDAJA44145.1
FamilyGH102
Sequence Length361
UniProt IDA0A0A7RXU4(100,100)Download
Average pLDDT?90.52
CAZy50 ID125754
CAZy50 RepYes, AJA44145.1
Structure ClusterSC_GH102_clus9
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1267021
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderOrbales
FamilyOrbaceae
GenusFrischella
SpeciesFrischella perrara

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGIGKTLNNI  NKLAVKYIFF  IVLLSACHYQ  PTQQGQQYTD  GKLSKLYNLT  YPQLGRPVNI60
DSYLEQVKLI  EQYSPQLFQK  NKVIYDGINQ  WIIRGLTTNQ  LNLVGLNSYQ  LQGQDKWGNV120
LLTGYYTPIM  KARRKPQAQY  HYPLYAKPIN  FSKQLPSRLE  IYEGALDGQK  LEIAYTDSLI180
DNFIMEVQGS  GYIDFEDGFP  PIFFSYNGKN  GHPYKSIGRL  LIEQGEIDRH  KISIQAIKAW240
AEKQDEQVVK  NLLIKNASAV  FFEPQGNALV  SGSTGVPLIA  QASVASDQTI  VPAGSVLLVD300
TPLLDDKGVY  RGQRELRLMI  ALDIGGAIRR  QHLDMYQGIG  EQAGNLAGYY  NHYGRVWLIT360
P361

Predicted 3D structure by AlphaFold2 with pLDDT = 90.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MGIGKTLNNI  NKLAVKYIFF  IVLLSACHYQ  PTQQGQQYTD  GKLSKLYNLT  YPQLGRPVNI60
DSYLEQVKLI  EQYSPQLFQK  NKVIYDGINQ  WIIRGLTTNQ  LNLVGLNSYQ  LQGQDKWGNV120
LLTGYYTPIM  KARRKPQAQY  HYPLYAKPIN  FSKQLPSRLE  IYEGALDGQK  LEIAYTDSLI180
DNFIMEVQGS  GYIDFEDGFP  PIFFSYNGKN  GHPYKSIGRL  LIEQGEIDRH  KISIQAIKAW240
AEKQDEQVVK  NLLIKNASAV  FFEPQGNALV  SGSTGVPLIA  QASVASDQTI  VPAGSVLLVD300
TPLLDDKGVY  RGQRELRLMI  ALDIGGAIRR  QHLDMYQGIG  EQAGNLAGYY  NHYGRVWLIT360
P361

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(130-263)

MGIGKTLNNI  NKLAVKYIFF  IVLLSACHYQ  PTQQGQQYTD  GKLSKLYNLT  YPQLGRPVNI60
DSYLEQVKLI  EQYSPQLFQK  NKVIYDGINQ  WIIRGLTTNQ  LNLVGLNSYQ  LQGQDKWGNV120
LLTGYYTPIM  KARRKPQAQY  HYPLYAKPIN  FSKQLPSRLE  IYEGALDGQK  LEIAYTDSLI180
DNFIMEVQGS  GYIDFEDGFP  PIFFSYNGKN  GHPYKSIGRL  LIEQGEIDRH  KISIQAIKAW240
AEKQDEQVVK  NLLIKNASAV  FFEPQGNALV  SGSTGVPLIA  QASVASDQTI  VPAGSVLLVD300
TPLLDDKGVY  RGQRELRLMI  ALDIGGAIRR  QHLDMYQGIG  EQAGNLAGYY  NHYGRVWLIT360
P361

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help