CAZyme3D

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Entry ID

Information for CAZyme ID: AIY85852.1

Basic Information

GenBank IDAIY85852.1
FamilyGT4
Sequence Length385
UniProt IDAIY85852.1(MOD)Download
Average pLDDT?93.75
CAZy50 ID108050
CAZy50 RepYes, AIY85852.1
Structure ClusterSC_GT4_clus185
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1157948
KingdomBacteria
PhylumThermotogota
ClassThermotogae
OrderThermotogales
FamilyThermotogaceae
GenusThermotoga
SpeciesThermotoga sp. 2812B

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSKNRKIRCL  QVLTRSDWAG  AQKVVYNLIY  GIKEKYSDII  EVEVACGKEN  GLLINELKRL60
GVVVHIVPDL  VREISPIKDL  KAFFELLKII  KEGKYDVVHL  HMSKVRVLGG  LAAKLSGVKG120
IYATVHGWWH  IEQYSGLKRS  FLILAERFAA  IFFDKIVLLC  HRDLLKAKKW  KIGKDSQYVI180
IPNALIPQPP  APKGKLRKEL  GIPENVKIVG  NVARLDRPKN  PVRFLQVAER  VVQEMDDVIF240
VWIGGSIVED  FYAKQVQQYL  DERPWLKEKV  KILGFRKDAI  ELMADFDVFL  LTSDEEGFGL300
VILEAMSLGK  IVVSTRCGGP  EDIIEDKING  FLTGFDYKEI  ATKINFILEN  FESIKQKIGQ360
AAVERAKDFK  IDNQVEGYVR  LYKKG385

Predicted 3D structure by AlphaFold2 with pLDDT = 93.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSKNRKIRCL  QVLTRSDWAG  AQKVVYNLIY  GIKEKYSDII  EVEVACGKEN  GLLINELKRL60
GVVVHIVPDL  VREISPIKDL  KAFFELLKII  KEGKYDVVHL  HMSKVRVLGG  LAAKLSGVKG120
IYATVHGWWH  IEQYSGLKRS  FLILAERFAA  IFFDKIVLLC  HRDLLKAKKW  KIGKDSQYVI180
IPNALIPQPP  APKGKLRKEL  GIPENVKIVG  NVARLDRPKN  PVRFLQVAER  VVQEMDDVIF240
VWIGGSIVED  FYAKQVQQYL  DERPWLKEKV  KILGFRKDAI  ELMADFDVFL  LTSDEEGFGL300
VILEAMSLGK  IVVSTRCGGP  EDIIEDKING  FLTGFDYKEI  ATKINFILEN  FESIKQKIGQ360
AAVERAKDFK  IDNQVEGYVR  LYKKG385

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(201-351)

MSKNRKIRCL  QVLTRSDWAG  AQKVVYNLIY  GIKEKYSDII  EVEVACGKEN  GLLINELKRL60
GVVVHIVPDL  VREISPIKDL  KAFFELLKII  KEGKYDVVHL  HMSKVRVLGG  LAAKLSGVKG120
IYATVHGWWH  IEQYSGLKRS  FLILAERFAA  IFFDKIVLLC  HRDLLKAKKW  KIGKDSQYVI180
IPNALIPQPP  APKGKLRKEL  GIPENVKIVG  NVARLDRPKN  PVRFLQVAER  VVQEMDDVIF240
VWIGGSIVED  FYAKQVQQYL  DERPWLKEKV  KILGFRKDAI  ELMADFDVFL  LTSDEEGFGL300
VILEAMSLGK  IVVSTRCGGP  EDIIEDKING  FLTGFDYKEI  ATKINFILEN  FESIKQKIGQ360
AAVERAKDFK  IDNQVEGYVR  LYKKG385

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help