CAZyme3D

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Entry ID

Information for CAZyme ID: AIW88507.1

Basic Information

GenBank IDAIW88507.1
FamilyGH2
Sequence Length756
UniProt IDA0A898DJH8(95.9,100)Download
Average pLDDT?95.61
CAZy50 ID32063
CAZy50 RepYes, AIW88507.1
Structure ClusterSC_GH2_clus103
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1539298
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilyTreponemataceae
GenusTreponema
SpeciesTreponema sp. OMZ 838

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARTLIPLWQ  NWQFAENFTE  QYIQTHCDET  HFTEVQLPHT  VKELPYHYFD  EKVYQVESCY60
RKKFAVSSQL  QGMRLFIDFD  GVMCYAKVFV  NGQPVGEHKG  GYVPFPVEIT  QYVEYGDEER120
NVLVVYVDST  ERADIPPFGG  EVDYLCYGGI  YRDVTLRAVP  YCHIESMYAR  PVSVLTAEKS180
LQVDIAIAHS  ERTNKSIDVS  VALFDSRNRK  RAELSRSLVV  SVPSLSLSML  MDELIGLKLW240
TLEKPELYRV  EVSLLEDGMI  CDTVSTRIGF  RTAEFTPEGF  FLNGKPLKLR  GLNRHQSFPY300
VGYAMPERVQ  RKDADILKYE  LGVNIVRTSH  YPQSPYFLDR  CDEIGLLVFE  ETPGWQYIGD360
SAWQDISCES  IRKMIIRDRN  HPSIVLWGVR  INESPDCTAF  YQRTNTIAHE  LDPYRQTGGV420
RCIENSEFFE  DVYTMNDFIY  GSQGLPAGNG  AGTARVLRSQ  REVTGQSDVV  PYLVTEFGGH480
IYPTKRFDQE  ERLVEHAKLH  LAVQNAAALD  PQKCGAIGWC  AFDYNTHANF  GSGDRICYHG540
VMDMFRLPKF  AASVYASQLS  AEVRPVLEPL  TRYTVGDRAV  GGIAPLIICT  NCTAVRLTIG600
EKDLGLFYPA  FDRYPGFVHP  PVVIENLPSV  WGGGWEDAVF  TGYHNGKECI  TRRFTANPVA660
AQLVLIADET  KLRADIPDAV  RFVVRLLDQA  GNELPYSSEV  VQIKLKGPAE  VIGPKEFALI720
GGARGFWIKT  LGKAGTVKVS  AQTGEFKSGT  VSIRIR756

Predicted 3D structure by AlphaFold2 with pLDDT = 95.61 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MARTLIPLWQ  NWQFAENFTE  QYIQTHCDET  HFTEVQLPHT  VKELPYHYFD  EKVYQVESCY60
RKKFAVSSQL  QGMRLFIDFD  GVMCYAKVFV  NGQPVGEHKG  GYVPFPVEIT  QYVEYGDEER120
NVLVVYVDST  ERADIPPFGG  EVDYLCYGGI  YRDVTLRAVP  YCHIESMYAR  PVSVLTAEKS180
LQVDIAIAHS  ERTNKSIDVS  VALFDSRNRK  RAELSRSLVV  SVPSLSLSML  MDELIGLKLW240
TLEKPELYRV  EVSLLEDGMI  CDTVSTRIGF  RTAEFTPEGF  FLNGKPLKLR  GLNRHQSFPY300
VGYAMPERVQ  RKDADILKYE  LGVNIVRTSH  YPQSPYFLDR  CDEIGLLVFE  ETPGWQYIGD360
SAWQDISCES  IRKMIIRDRN  HPSIVLWGVR  INESPDCTAF  YQRTNTIAHE  LDPYRQTGGV420
RCIENSEFFE  DVYTMNDFIY  GSQGLPAGNG  AGTARVLRSQ  REVTGQSDVV  PYLVTEFGGH480
IYPTKRFDQE  ERLVEHAKLH  LAVQNAAALD  PQKCGAIGWC  AFDYNTHANF  GSGDRICYHG540
VMDMFRLPKF  AASVYASQLS  AEVRPVLEPL  TRYTVGDRAV  GGIAPLIICT  NCTAVRLTIG600
EKDLGLFYPA  FDRYPGFVHP  PVVIENLPSV  WGGGWEDAVF  TGYHNGKECI  TRRFTANPVA660
AQLVLIADET  KLRADIPDAV  RFVVRLLDQA  GNELPYSSEV  VQIKLKGPAE  VIGPKEFALI720
GGARGFWIKT  LGKAGTVKVS  AQTGEFKSGT  VSIRIR756

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(5-556)

MARTLLPLWQ  NWQFAENFTE  QYIQPDCDET  YFTEVQLPHT  VKELPYHYFA  EKIYQFESCY60
RKKFAVSHQL  QGMRLFIDFD  GVMCYAKVFV  NGQFAGEHKG  GYVPFSVEIT  QYVEYGDEER120
NVLVVYVDST  ERADIPPFGG  EVDYLCYGGI  YRDVTLRAVP  HCHIESMYAR  PVSILTAEKS180
LQVDIAIAHS  ERTNKSIDVS  VALFDSRNRK  RAELSRSLVV  SVPSLSLSML  MDELTGLKLW240
TLEKPELYRV  EVSLLEDGMV  CDAVSARIGF  RTAEFTPEGF  FLNGKLLKLR  GLNRHQSFPY300
VGYAMPERVQ  RKDADILKYE  LGVNIVRTSH  YPQSPYFLDR  CDEIGLLVFE  ETPGWQHIGD360
SAWQDVSCES  IRKMIIRDRN  HPSIILWGVR  INESPDCTAF  YQRTNTIAHE  LDPYRQTGGV420
RCIENSEFFE  DVYTMNDFIY  GSQGLPVGNG  AGIARALRSQ  REVTGQSDVV  PYLVTEFGGH480
IYPTKRFDQE  ERLVEHAKLH  LAVQNAAALD  PQKCGAIGWC  AFDYNTHANF  GSGDRICYHG540
VMDMFRLPKF  AASVYASQLS  AEVRPVLEPL  TRYTVGDRAV  GGIAPLIICT  NCTAVRLSIG600
EKDLGLFYPA  FDRYPGLAHP  PVVIENLPSV  WGGGWEDAVF  IGYHNGKECI  TRRFTANPVA660
TQLVLTADET  KLRADIPDAV  RFVVRLLDQA  GNELPYSSEV  VQIKLKGPAE  VIGPKEFALI720
GGARGFWIKT  LGKVGTVKVS  AQTGEFKSGT  VSIRIR756

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help