Information for CAZyme ID: AIW88507.1
Basic Information
GenBank ID | AIW88507.1 |
Family | GH2 |
Sequence Length | 756 |
UniProt ID | A0A898DJH8(95.9,100)![]() |
Average pLDDT? | 95.61 |
CAZy50 ID | 32063 |
CAZy50 Rep | Yes, AIW88507.1 |
Structure Cluster | SC_GH2_clus103 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1539298 |
Kingdom | Bacteria |
Phylum | Spirochaetota |
Class | Spirochaetia |
Order | Spirochaetales |
Family | Treponemataceae |
Genus | Treponema |
Species | Treponema sp. OMZ 838 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MARTLIPLWQ NWQFAENFTE QYIQTHCDET HFTEVQLPHT VKELPYHYFD EKVYQVESCY | 60 |
RKKFAVSSQL QGMRLFIDFD GVMCYAKVFV NGQPVGEHKG GYVPFPVEIT QYVEYGDEER | 120 |
NVLVVYVDST ERADIPPFGG EVDYLCYGGI YRDVTLRAVP YCHIESMYAR PVSVLTAEKS | 180 |
LQVDIAIAHS ERTNKSIDVS VALFDSRNRK RAELSRSLVV SVPSLSLSML MDELIGLKLW | 240 |
TLEKPELYRV EVSLLEDGMI CDTVSTRIGF RTAEFTPEGF FLNGKPLKLR GLNRHQSFPY | 300 |
VGYAMPERVQ RKDADILKYE LGVNIVRTSH YPQSPYFLDR CDEIGLLVFE ETPGWQYIGD | 360 |
SAWQDISCES IRKMIIRDRN HPSIVLWGVR INESPDCTAF YQRTNTIAHE LDPYRQTGGV | 420 |
RCIENSEFFE DVYTMNDFIY GSQGLPAGNG AGTARVLRSQ REVTGQSDVV PYLVTEFGGH | 480 |
IYPTKRFDQE ERLVEHAKLH LAVQNAAALD PQKCGAIGWC AFDYNTHANF GSGDRICYHG | 540 |
VMDMFRLPKF AASVYASQLS AEVRPVLEPL TRYTVGDRAV GGIAPLIICT NCTAVRLTIG | 600 |
EKDLGLFYPA FDRYPGFVHP PVVIENLPSV WGGGWEDAVF TGYHNGKECI TRRFTANPVA | 660 |
AQLVLIADET KLRADIPDAV RFVVRLLDQA GNELPYSSEV VQIKLKGPAE VIGPKEFALI | 720 |
GGARGFWIKT LGKAGTVKVS AQTGEFKSGT VSIRIR | 756 |
Predicted 3D structure by AlphaFold2 with pLDDT = 95.61 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MARTLIPLWQ NWQFAENFTE QYIQTHCDET HFTEVQLPHT VKELPYHYFD EKVYQVESCY | 60 |
RKKFAVSSQL QGMRLFIDFD GVMCYAKVFV NGQPVGEHKG GYVPFPVEIT QYVEYGDEER | 120 |
NVLVVYVDST ERADIPPFGG EVDYLCYGGI YRDVTLRAVP YCHIESMYAR PVSVLTAEKS | 180 |
LQVDIAIAHS ERTNKSIDVS VALFDSRNRK RAELSRSLVV SVPSLSLSML MDELIGLKLW | 240 |
TLEKPELYRV EVSLLEDGMI CDTVSTRIGF RTAEFTPEGF FLNGKPLKLR GLNRHQSFPY | 300 |
VGYAMPERVQ RKDADILKYE LGVNIVRTSH YPQSPYFLDR CDEIGLLVFE ETPGWQYIGD | 360 |
SAWQDISCES IRKMIIRDRN HPSIVLWGVR INESPDCTAF YQRTNTIAHE LDPYRQTGGV | 420 |
RCIENSEFFE DVYTMNDFIY GSQGLPAGNG AGTARVLRSQ REVTGQSDVV PYLVTEFGGH | 480 |
IYPTKRFDQE ERLVEHAKLH LAVQNAAALD PQKCGAIGWC AFDYNTHANF GSGDRICYHG | 540 |
VMDMFRLPKF AASVYASQLS AEVRPVLEPL TRYTVGDRAV GGIAPLIICT NCTAVRLTIG | 600 |
EKDLGLFYPA FDRYPGFVHP PVVIENLPSV WGGGWEDAVF TGYHNGKECI TRRFTANPVA | 660 |
AQLVLIADET KLRADIPDAV RFVVRLLDQA GNELPYSSEV VQIKLKGPAE VIGPKEFALI | 720 |
GGARGFWIKT LGKAGTVKVS AQTGEFKSGT VSIRIR | 756 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.