CAZyme3D

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Entry ID

Information for CAZyme ID: AIN57832.1

Basic Information

GenBank IDAIN57832.1
FamilyPL7_2
Sequence Length230
UniProt IDA0A1H9E2B5(99.6,100)Download
Average pLDDT?95.86
CAZy50 ID176084
CAZy50 RepYes, AIN57832.1
Structure ClusterSC_PL7_clus35
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1306993
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas soli

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTVNIDNLII  TTPVAKSSSN  PVALELTGVQ  ALASLPQVIS  RLADGAVRMN  APTKGAASKS60
THRTRCEWKE  AVYWTLASAG  RHVNHQRMVL  ERVNSAQKVV  IAQMHVKDDD  SPAIKVFWNK120
GKITLGFRQD  FNQVTPTSST  VLADVPLGMP  FDITIEVTAT  GAATVSAACT  GRTGSSGMLK180
MAASWSGRTF  NFHGGVYNQV  DFSDSTPPTD  ASTCVISQLD  LFHRQVDTFI  230

Predicted 3D structure by AlphaFold2 with pLDDT = 95.86 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MTVNIDNLII  TTPVAKSSSN  PVALELTGVQ  ALASLPQVIS  RLADGAVRMN  APTKGAASKS60
THRTRCEWKE  AVYWTLASAG  RHVNHQRMVL  ERVNSAQKVV  IAQMHVKDDD  SPAIKVFWNK120
GKITLGFRQD  FNQVTPTSST  VLADVPLGMP  FDITIEVTAT  GAATVSAACT  GRTGSSGMLK180
MAASWSGRTF  NFHGGVYNQV  DFSDSTPPTD  ASTCVISQLD  LFHRQVDTFI  230

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL7_2(4-223)

MTVNIDNLII  TTPVAKSSSN  PVALELTGAQ  ALASLPQVIS  RLADGAVRMN  APTKGAASKS60
THRTRCEWKE  AVYWTLASAG  RHVNHQRMVL  ERVNSAQKVV  IAQMHVKDDD  SPAIKVFWNK120
GKITLGFRQD  FNQVTPTSST  VLADVPLGMP  FDITIEVTAT  GAATVSAACT  GRTGSSGMLK180
MAASWSGRTF  NFHGGVYNQV  DFSDSTPPTD  ASTCVISQLD  LFHRQVDTFI  230

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help