Information for CAZyme ID: AIK28470.2
Basic Information
GenBank ID | AIK28470.2 |
Family | GH5_2 |
Sequence Length | 548 |
UniProt ID | A0A0R5NHD8(100,100)![]() |
Average pLDDT? | 86.69 |
CAZy50 ID | 59824 |
CAZy50 Rep | Yes, AIK28470.2 |
Structure Cluster | SC_GH5_clus32 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 269767 |
Kingdom | Eukaryota |
Phylum | Nematoda |
Class | Chromadorea |
Order | Rhabditida |
Family | Aphelenchoididae |
Genus | Aphelenchoides |
Species | Aphelenchoides besseyi |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MKIVLVLTVI VVFCGHVAEG AFGCPEGGQM TDYLRQQVLD FHNNFRTNVG RNEPINYKNN | 60 |
NFTFESGQNM YKVKYNCELE QYSAGPTSQC TWEANNESKA AGAVVIGNYF PQYDDTTPSH | 120 |
TFYNAMRQWL WEYYNERTSN ETPTKANGME GATLLHKYNI EVGCSFRNSC WINENGQPVK | 180 |
KRVAVCSYWR RGTNATNVYE KGVACKTDED CTTYPAKCEP QWGLCVLKSQ PPAYGRLSYR | 240 |
GLNLTGENNQ SVALHGMCLF GTNNGDGIPF YVPSAIQQLK CNWNTNAFRA VLDTGNGADG | 300 |
GYIMTERDFP NKKHDKYRLD TVIKAAIEFG MYVIVDWHGI AGQIALYKLQ ATAYFSYVSE | 360 |
RFGMFPHMLY ETFNEPYNST WTPFLKNYHL TMINAIRAFD KKNVIIVSPP MGDYPRNDTP | 420 |
IESPITGHVN IAYTKHFYAA SHKLNSQYNP QKYLDAGLPL FVTEYGTTDH TGRTGYDAVE | 480 |
MQKWWDYLDA NKISYFNWAL ENAGEQRHMC SALVNKTAVS DMSLDSKLTT SGRLVKTHYK | 540 |
NQNNGVSC | 548 |
Predicted 3D structure by AlphaFold2 with pLDDT = 86.69 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MKIVLVLTVI VVFCGHVAEG AFGCPEGGQM TDYLRQQVLD FHNNFRTNVG RNEPINYKNN | 60 |
NFTFESGQNM YKVKYNCELE QYSAGPTSQC TWEANNESKA AGAVVIGNYF PQYDDTTPSH | 120 |
TFYNAMRQWL WEYYNERTSN ETPTKANGME GATLLHKYNI EVGCSFRNSC WINENGQPVK | 180 |
KRVAVCSYWR RGTNATNVYE KGVACKTDED CTTYPAKCEP QWGLCVLKSQ PPAYGRLSYR | 240 |
GLNLTGENNQ SVALHGMCLF GTNNGDGIPF YVPSAIQQLK CNWNTNAFRA VLDTGNGADG | 300 |
GYIMTERDFP NKKHDKYRLD TVIKAAIEFG MYVIVDWHGI AGQIALYKLQ ATAYFSYVSE | 360 |
RFGMFPHMLY ETFNEPYNST WTPFLKNYHL TMINAIRAFD KKNVIIVSPP MGDYPRNDTP | 420 |
IESPITGHVN IAYTKHFYAA SHKLNSQYNP QKYLDAGLPL FVTEYGTTDH TGRTGYDAVE | 480 |
MQKWWDYLDA NKISYFNWAL ENAGEQRHMC SALVNKTAVS DMSLDSKLTT SGRLVKTHYK | 540 |
NQNNGVSC | 548 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.