CAZyme3D

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Entry ID

Information for CAZyme ID: AIF18171.1

Basic Information

GenBank IDAIF18171.1
FamilyGT1
Sequence Length412
UniProt IDA0A075HP26(100,100)Download
Average pLDDT?87.79
CAZy50 ID92800
CAZy50 RepYes, AIF18171.1
Structure ClusterSC_GT1_clus221
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1456302
KingdomArchaea
PhylumNitrososphaerota
Class
Order
Family
Genus
Speciesuncultured marine thaumarchaeote KM3_82_B03

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKDMAKIGQF  IYPWGNGHYS  RMMRLNEKLK  ELGDNEFHYF  SKGDIYQKLL  DKFPDEKQNI60
HEVLMPTPID  GKFGPSLRKS  LWNFLLPVEG  NEPLVTQISS  YLKDEGKLYN  KIGFDLVIND120
GDMGSNVLAQ  RRNITSLFVT  NQFKPKLWKS  RLYFKPALEF  VAKQISKASK  ILVADSEPPY180
TMCEYNLNFT  KDIQEKVVYV  GHFTNEKKIE  KGEKGDLEKL  VSDSVYGYWM  RTGNKSTNDG240
TGERYEEAFH  QPELKNEKRI  ISHAKNDESI  DRVLDKDGNE  YSISEAYEKK  IDWIQIDKGF300
LSEQEKETVL  DLCKYAVVNG  SHTVMGEILG  GHGKPIIGIP  IYDEHTNQIE  WIKEKKMGLF360
AQNRGQIVEA  VKQMYENYEE  YTDSVKGFSR  NFNGNGVSNT  TKIVSEILED  KK412

Predicted 3D structure by AlphaFold2 with pLDDT = 87.79 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKDMAKIGQF  IYPWGNGHYS  RMMRLNEKLK  ELGDNEFHYF  SKGDIYQKLL  DKFPDEKQNI60
HEVLMPTPID  GKFGPSLRKS  LWNFLLPVEG  NEPLVTQISS  YLKDEGKLYN  KIGFDLVIND120
GDMGSNVLAQ  RRNITSLFVT  NQFKPKLWKS  RLYFKPALEF  VAKQISKASK  ILVADSEPPY180
TMCEYNLNFT  KDIQEKVVYV  GHFTNEKKIE  KGEKGDLEKL  VSDSVYGYWM  RTGNKSTNDG240
TGERYEEAFH  QPELKNEKRI  ISHAKNDESI  DRVLDKDGNE  YSISEAYEKK  IDWIQIDKGF300
LSEQEKETVL  DLCKYAVVNG  SHTVMGEILG  GHGKPIIGIP  IYDEHTNQIE  WIKEKKMGLF360
AQNRGQIVEA  VKQMYENYEE  YTDSVKGFSR  NFNGNGVSNT  TKIVSEILED  KK412

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MKDMAKIGQF  IYPWGNGHYS  RMMRLNEKLK  ELGDNEFHYF  SKGDIYQKLL  DKFPDEKQNI60
HEVLMPTPID  GKFGPSLRKS  LWNFLLPVEG  NEPLVTQISS  YLKDEGKLYN  KIGFDLVIND120
GDMGSNVLAQ  RRNITSLFVT  NQFKPKLWKS  RLYFKPALEF  VAKQISKASK  ILVADSEPPY180
TMCEYNLNFT  KDIQEKVVYV  GHFTNEKKIE  KGEKGDLEKL  VSDSVYGYWM  RTGNKSTNDG240
TGERYEEAFH  QPELKNEKRI  ISHAKNDESI  DRVLDKDGNE  YSISEAYEKK  IDWIQIDKGF300
LSEQEKETVL  DLCKYAVVNG  SHTVMGEILG  GHGKPIIGIP  IYDEHTNQIE  WIKEKKMGLF360
AQNRGQIVEA  VKQMYENYEE  YTDSVKGFSR  NFNGNGVSNT  TKIVSEILED  KK412

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help