CAZyme3D

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Entry ID

Information for CAZyme ID: AIF16460.1

Basic Information

GenBank IDAIF16460.1
FamilyGT4
Sequence Length363
UniProt IDA0A075HMK6(100,100)Download
Average pLDDT?91.21
CAZy50 ID124124
CAZy50 RepYes, AIF16460.1
Structure ClusterSC_GT4_clus864
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1456270
KingdomArchaea
PhylumNitrososphaerota
Class
Order
Family
Genus
Speciesuncultured marine thaumarchaeote KM3_74_C10

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRILHLLYDS  PHNPWIGGGA  AIRAHQVYRR  FPQEFEINIV  SGGYANCPRE  ESHGNFLVSY60
GPETRSAIGS  GLQYMLKSHQ  RLSKDSYDLV  VEDFSPFTPC  FSPIFARAPV  VTLMQNIFGK120
HLVARYGLAG  TVPALVEATT  RRLHSNFLFV  SPLFANWTKK  FQNKMTAIIP  NGVEDELLKL180
EPNDEGFLLF  IGRLERYQKG  LDLMIEALAN  GIDHEFDVVI  AGDGPDHLDL  KQRIESKNLA240
RRIRMIGRVS  ENEKRDLLRR  CSAVIVPSRF  EAWSLVALEA  AASCKPVIGF  AIPGINGIVK300
SGITGVLARP  FEINQLSTAI  SHVMNDHYLR  RKLGKEARKE  AKEFTWTVVA  KRQLEFYEQV360
RAG363

Predicted 3D structure by AlphaFold2 with pLDDT = 91.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRILHLLYDS  PHNPWIGGGA  AIRAHQVYRR  FPQEFEINIV  SGGYANCPRE  ESHGNFLVSY60
GPETRSAIGS  GLQYMLKSHQ  RLSKDSYDLV  VEDFSPFTPC  FSPIFARAPV  VTLMQNIFGK120
HLVARYGLAG  TVPALVEATT  RRLHSNFLFV  SPLFANWTKK  FQNKMTAIIP  NGVEDELLKL180
EPNDEGFLLF  IGRLERYQKG  LDLMIEALAN  GIDHEFDVVI  AGDGPDHLDL  KQRIESKNLA240
RRIRMIGRVS  ENEKRDLLRR  CSAVIVPSRF  EAWSLVALEA  AASCKPVIGF  AIPGINGIVK300
SGITGVLARP  FEINQLSTAI  SHVMNDHYLR  RKLGKEARKE  AKEFTWTVVA  KRQLEFYEQV360
RAG363

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(181-334)

MRILHLLYDS  PHNPWIGGGA  AIRAHQVYRR  FPQEFEINIV  SGGYANCPRE  ESHGNFLVSY60
GPETRSAIGS  GLQYMLKSHQ  RLSKDSYDLV  VEDFSPFTPC  FSPIFARAPV  VTLMQNIFGK120
HLVARYGLAG  TVPALVEATT  RRLHSNFLFV  SPLFANWTKK  FQNKMTAIIP  NGVEDELLKL180
EPNDEGFLLF  IGRLERYQKG  LDLMIEALAN  GIDHEFDVVI  AGDGPDHLDL  KQRIESKNLA240
RRIRMIGRVS  ENEKRDLLRR  CSAVIVPSRF  EAWSLVALEA  AASCKPVIGF  AIPGINGIVK300
SGITGVLARP  FEINQLSTAI  SHVMNDHYLR  RKLGKEARKE  AKEFTWTVVA  KRQLEFYEQV360
RAG363

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help