CAZyme3D

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Entry ID

Information for CAZyme ID: AHN97894.1

Basic Information

GenBank IDAHN97894.1
FamilyGT2
Sequence Length706
UniProt IDX2L848(100,100)Download
Average pLDDT?86.70
CAZy50 ID37959
CAZy50 RepYes, AHN97894.1
Structure ClusterSC_GT2_clus700
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1447238
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium lac146

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLQELVLDAK  NVPPGWALVE  GNLGRRGRHL  SSSLRMLRSD  AGPTEEVPLA  ALASGRIFEL60
IRFPANVGKI  VWRPPLIGQY  DRSQIRIRRI  GWIKRTVLMA  VRVLRTYLRL  APEEREECGL120
SLPHALFDLP  GAYRICTDFR  VRMWTQPYSE  WIERHDTLSE  RDRGRIREHI  ERFASRPRFH180
LVVAAHGEGG  VEAVRRSVAS  LDAQLYREYD  CTVVDPHGAL  AAGGDGVPAK  GRGELAPWLS240
DFNTRLAAGH  SRDWIVLMRA  GDTLPPQSLY  WLAWQIQAAV  DAAVVYSDDD  AMDEAGARHD300
PRFKPDWSPE  HLRAVHYIGS  AAAMRGDAIA  AAGGIRPECC  RHGNYDLLLR  IVDAGPARVV360
HVPAVLYHRA  LRGQGEWESG  PSCNVALKAH  LARNRVEADI  MPAPPAGRHI  RYRLPDSPPL420
VTIVIPTRDA  LALLERCVES  LLEKTTYPRY  ELLVVDNRSR  TPDALAYLQR  ISTHPRVRVV480
RYRRRFNYSA  INNFASRLAQ  GEALCLLNND  TEIISPDWLE  EMVGHLIQKR  VGAVGAKLYY540
PDGRVQHAGV  TVGPGGCATH  LHLDLDRATG  GYCGRAAIAQ  ELSAVTGACL  LTWKSVYQEL600
GGLEEKRLTV  GFNDIDYCMR  LREAGWRVIF  TPHAELYHHE  SATRGNDDPL  PRRLRARREV660
QFMRRRWRER  MTNDPYYNPN  LSYRRPDFAL  GESRRVRRPW  QHPASS706

Predicted 3D structure by AlphaFold2 with pLDDT = 86.70 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLQELVLDAK  NVPPGWALVE  GNLGRRGRHL  SSSLRMLRSD  AGPTEEVPLA  ALASGRIFEL60
IRFPANVGKI  VWRPPLIGQY  DRSQIRIRRI  GWIKRTVLMA  VRVLRTYLRL  APEEREECGL120
SLPHALFDLP  GAYRICTDFR  VRMWTQPYSE  WIERHDTLSE  RDRGRIREHI  ERFASRPRFH180
LVVAAHGEGG  VEAVRRSVAS  LDAQLYREYD  CTVVDPHGAL  AAGGDGVPAK  GRGELAPWLS240
DFNTRLAAGH  SRDWIVLMRA  GDTLPPQSLY  WLAWQIQAAV  DAAVVYSDDD  AMDEAGARHD300
PRFKPDWSPE  HLRAVHYIGS  AAAMRGDAIA  AAGGIRPECC  RHGNYDLLLR  IVDAGPARVV360
HVPAVLYHRA  LRGQGEWESG  PSCNVALKAH  LARNRVEADI  MPAPPAGRHI  RYRLPDSPPL420
VTIVIPTRDA  LALLERCVES  LLEKTTYPRY  ELLVVDNRSR  TPDALAYLQR  ISTHPRVRVV480
RYRRRFNYSA  INNFASRLAQ  GEALCLLNND  TEIISPDWLE  EMVGHLIQKR  VGAVGAKLYY540
PDGRVQHAGV  TVGPGGCATH  LHLDLDRATG  GYCGRAAIAQ  ELSAVTGACL  LTWKSVYQEL600
GGLEEKRLTV  GFNDIDYCMR  LREAGWRVIF  TPHAELYHHE  SATRGNDDPL  PRRLRARREV660
QFMRRRWRER  MTNDPYYNPN  LSYRRPDFAL  GESRRVRRPW  QHPASS706

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(422-547)+GT2(506-655)

MLQELVLDAK  NVPPGWALVE  GNLGRRGRHL  SSSLRMLRSD  AGPTEEVPLA  ALASGRIFEL60
IRFPANVGKI  VWRPPLIGQY  DRSQIRIRRI  GWIKRTVLMA  VRVLRTYLRL  APEEREECGL120
SLPHALFDLP  GAYRICTDFR  VRMWTQPYSE  WIERHDTLSE  RDRGRIREHI  ERFASRPRFH180
LVVAAHGEGG  VEAVRRSVAS  LDAQLYREYD  CTVVDPHGAL  AAGGDGVPAK  GRGELAPWLS240
DFNTRLAAGH  SRDWIVLMRA  GDTLPPQSLY  WLAWQIQAAV  DAAVVYSDDD  AMDEAGARHD300
PRFKPDWSPE  HLRAVHYIGS  AAAMRGDAIA  AAGGIRPECC  RHGNYDLLLR  IVDAGPARVV360
HVPAVLYHRA  LRGQGEWESG  PSCNVALKAH  LARNRVEADI  MPAPPAGRHI  RYRLPDSPPL420
VTIVIPTRDA  LALLERCVES  LLEKTTYPRY  ELLVVDNRSR  TPDALAYLQR  ISTHPRVRVV480
RYRRRFNYSA  INNFASRLAQ  GEALCLLNND  TEIISPDWLE  EMVGHLIQKR  VGAVGAKLYY540
PDGRVQHAGV  TVGPGGCATH  LHLDLDRATG  GYCGRAAIAQ  ELSAVTGACL  LTWKSVYQEL600
GGLEEKRLTV  GFNDIDYCMR  LREAGWRVIF  TPHAELYHHE  SATRGNDDPL  PRRLRARREV660
QFMRRRWRER  MTNDPYYNPN  LSYRRPDFAL  GESRRVRRPW  QHPASS706

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help