CAZyme3D

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Entry ID

Information for CAZyme ID: AHI03496.1

Basic Information

GenBank IDAHI03496.1
FamilyGH32
Sequence Length505
UniProt IDA0A418Q6B2(98.8,100)Download
Average pLDDT?89.75
CAZy50 ID67800
CAZy50 RepYes, AHI03496.1
Structure ClusterSC_GH32_clus36
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1451189
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyCorynebacteriaceae
GenusCorynebacterium
SpeciesCorynebacterium falsenii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHSSSHKHRP  ELHITAETGV  LEAPAGALIV  DGSMHVFHQF  RPRESAGSRW  AHQVASEVAY60
DWDVCDDVVV  PEGSGDGHDI  DILAGSTVAI  DERAAELFFV  VTHPKDVSDD  DALGTHITHR120
QRGPRTFTIH  RAAIDDVSEL  TDVSDDPTHA  DPRVRRLGPI  DVDDSRYAVS  DLVTPCVIHR180
PDQTYPDQPW  LMLALALEGS  EDARIVVLRS  ADRQSWQVLG  PLELPERTVR  DSRPFAPRMV240
SMVDAATGAT  HDVLFITYEG  VEGESKEVAG  YVVGTLSGTE  FNVRTPFRPI  DYGHDFTRPR300
IIPFDNPVMF  GLVGSHPSIE  STWANCLSAP  RYLTLSEGKL  YQDILGAPSA  VRAFSDYAFI360
WSARIKPHEG  TVTVTVNGES  GDPLATITYQ  ASEVTVTRHP  GGDSRSAELG  PDESGSLTIF420
YDSPVCEVFA  DGGAATLTST  MPSESRVASI  DVSTAEGAVV  ESSMQSSGRQ  IMRSRAGLTS480
PEEQERFQAE  ALIADRDVAE  DLFED505

Predicted 3D structure by AlphaFold2 with pLDDT = 89.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MHSSSHKHRP  ELHITAETGV  LEAPAGALIV  DGSMHVFHQF  RPRESAGSRW  AHQVASEVAY60
DWDVCDDVVV  PEGSGDGHDI  DILAGSTVAI  DERAAELFFV  VTHPKDVSDD  DALGTHITHR120
QRGPRTFTIH  RAAIDDVSEL  TDVSDDPTHA  DPRVRRLGPI  DVDDSRYAVS  DLVTPCVIHR180
PDQTYPDQPW  LMLALALEGS  EDARIVVLRS  ADRQSWQVLG  PLELPERTVR  DSRPFAPRMV240
SMVDAATGAT  HDVLFITYEG  VEGESKEVAG  YVVGTLSGTE  FNVRTPFRPI  DYGHDFTRPR300
IIPFDNPVMF  GLVGSHPSIE  STWANCLSAP  RYLTLSEGKL  YQDILGAPSA  VRAFSDYAFI360
WSARIKPHEG  TVTVTVNGES  GDPLATITYQ  ASEVTVTRHP  GGDSRSAELG  PDESGSLTIF420
YDSPVCEVFA  DGGAATLTST  MPSESRVASI  DVSTAEGAVV  ESSMQSSGRQ  IMRSRAGLTS480
PEEQERFQAE  ALIADRDVAE  DLFED505

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(13-342)

MNGVMHSSSH  KHRPELHITA  ETGVLEAPAG  ALIVDGSMHV  FHQFRPRESA  GSRWAHQVAS60
EVAYDWDVCD  DVVVPEGSGD  GHDIDILAGS  TVAIDERAAE  LFFVVTHPED  VSDDDALGTH120
ITHRQRGPRT  FTIHRAAIDD  VSELTDVSDD  PTHADPRVRR  LGPIDVDDSR  YAVSDLVTPC180
VIHRPDQTYP  DQPWLMLALA  LEGSEDARIV  VLRSADRQSW  QVLGPLELPE  RTVRDSRPFA240
PRLVSMVDAA  TGATHDVLFI  TYEGVDGESK  EVAGYVVGTL  SGTEFNVRTP  FRPIDYGHDF300
TRPRIIPFDN  PVMFGLVGSH  PSIESTWANC  LSAPRYLTLS  EGKLYQDILG  APSAVRAFSD360
YAFIWSARIK  PHEGTVTVTV  NGESADPLAT  ITYQASEVTV  TRHPGGDSRS  AELGPDESGS420
LTIFYDSPVC  EVFADGGAAT  LTSTMPSESR  VASIDVSTAD  GAVVESSMQS  SGRQIMRSCA480
GLTSPEEQER  FQAEALIADR  DVAEDLFED509

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help