CAZyme3D

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Entry ID

Information for CAZyme ID: AHI01161.1

Basic Information

GenBank IDAHI01161.1
FamilyGH5_18
Sequence Length404
UniProt IDW5WK95(100,100)Download
Average pLDDT?96.85
CAZy50 ID96819
CAZy50 RepYes, AHI01161.1
Structure ClusterSC_GH5_clus183
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1449976
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusKutzneria
SpeciesKutzneria albida

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRFGANYTPS  QQWWHAWLDF  DPGSISKDLD  DLAGLGLDHV  RVFPIWPVFQ  PNRGVVRERA60
VEQLLELVRL  AAAAGLDVSV  DGIQGHLSSF  DFYPSWTQTW  HQRNVFTDPD  VLAGQALLLR120
TLATALRGEP  NYLGMTLGNE  MNNLVPHNPC  TPEQVDAWID  HLLAVCAQAD  PDHPHCHSAF180
DDAWYVDGHP  FTPQASARKG  AMTTVHPWVF  SLDCARRYGP  LSTEVTHLAE  YGTELARAYG240
EVGRVIWVQE  LGAPDPHIPV  ADAPEYAAQT  LANVTTCADV  WGVTWWCSHD  VDRRFVDYPV300
LEYGLGLLRT  DGSRKPLAET  VSRAVRELRS  TPPQPAVRKT  ALVFEGGGLD  SRRESGPGGA360
FFEAWMRLAA  QGVRVATVLA  DRSDDSAYLA  ARGITELVQL  GDVT404

Predicted 3D structure by AlphaFold2 with pLDDT = 96.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRFGANYTPS  QQWWHAWLDF  DPGSISKDLD  DLAGLGLDHV  RVFPIWPVFQ  PNRGVVRERA60
VEQLLELVRL  AAAAGLDVSV  DGIQGHLSSF  DFYPSWTQTW  HQRNVFTDPD  VLAGQALLLR120
TLATALRGEP  NYLGMTLGNE  MNNLVPHNPC  TPEQVDAWID  HLLAVCAQAD  PDHPHCHSAF180
DDAWYVDGHP  FTPQASARKG  AMTTVHPWVF  SLDCARRYGP  LSTEVTHLAE  YGTELARAYG240
EVGRVIWVQE  LGAPDPHIPV  ADAPEYAAQT  LANVTTCADV  WGVTWWCSHD  VDRRFVDYPV300
LEYGLGLLRT  DGSRKPLAET  VSRAVRELRS  TPPQPAVRKT  ALVFEGGGLD  SRRESGPGGA360
FFEAWMRLAA  QGVRVATVLA  DRSDDSAYLA  ARGITELVQL  GDVT404

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_18(15-291)

MRFGANYTPS  QQWWHAWLDF  DPGSISKDLD  DLAGLGLDHV  RVFPIWPVFQ  PNRGVVRERA60
VEQLLELVRL  AAAAGLDVSV  DGIQGHLSSF  DFYPSWTQTW  HQRNVFTDPD  VLAGQALLLR120
TLATALRGEP  NYLGMTLGNE  MNNLVPHNPC  TPEQVDAWID  HLLAVCAQAD  PDHPHCHSAF180
DDAWYVDGHP  FTPQASARKG  AMTTVHPWVF  SLDCARRYGP  LSTEVTHLAE  YGTELARAYG240
EVGRVIWVQE  LGAPDPHIPV  ADAPEYAAQT  LANVTTCADV  WGVTWWCSHD  VDRRFVDYPV300
LEYGLGLLRT  DGSRKPLAET  VSRAVRELRS  TPPQPAVRKT  ALVFEGGGLD  SRRESGPGGA360
FFEAWMRLAA  QGVRVATVLA  DRSDDSAYLA  ARGITELVQL  GDVT404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help