CAZyme3D

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Entry ID

Information for CAZyme ID: AHG87644.1

Basic Information

GenBank IDAHG87644.1
FamilyCE4, GH18, GT2
Sequence Length1182
UniProt IDW0R952(100,100)Download
Average pLDDT?82.38
CAZy50 ID8228
CAZy50 RepYes, AHG87644.1
Structure ClusterSC_CE4_clus67, SC_GH18_clus100, SC_GT2_clus518
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID861299
KingdomBacteria
PhylumGemmatimonadota
ClassGemmatimonadetes
OrderGemmatimonadales
FamilyGemmatimonadaceae
GenusGemmatirosa
SpeciesGemmatirosa kalamazoonensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPERVPVFLD  ESGLRWRRVR  LAVRAAAVAT  SIVALTVIIA  ALVLPNLGAL  SETLMPPQRA60
LGQPARFAIT  RKTRALLNAR  RKLFGALSHT  PAPPAQRPAR  IAVRPAPAFR  PIPPAAERRD120
AIVAGFYVNW  DENSRVSLEF  HKERLDWVVP  EWVFVARGGD  SLEFRLDQPP  GAAQQLFQSL180
GTVPAERRPH  VVAMLTNYDS  RAGRFSSPSW  LTRLIGTPAN  RARAVAQLRD  FVRAYRPYGV240
GGITIDLEEY  PESLDPAVIA  FAAELRAALQ  PLGAIVAQTL  ATDIDPARAG  RLAAPNDYVF300
LMLYDEHYGK  SEAGPVASQA  WYEKWARDYL  QYIPANKAIF  AMGAYGYHWS  DAPGVAASGV360
NFEAAVDSAR  SKHVAISWDS  VALNPYVTWT  DPDSTDHVMW  FLDGVTAYNQ  AKAAESMGAA420
GVGIWHLGDE  DPSLWNVLGR  HGLDGPPSRL  ADIDTLYQTQ  FVGDGELLRI  PDVPRRGRRA480
LRTDPTTGLV  TSERVTELPS  PFVVVRAGVD  TARSDGHGGL  AGRKIALTFD  DGPDGRWTPV540
ILDTLRAHGV  PATFFLIGQN  VQAHIALTRR  IYNEGHEIGN  HTFTHPNLSL  VPGFITRLQL600
DATERLLEAV  LNRRTAFFRP  PLFGDATPST  ADEQVPVAIA  TRLGFVTAGL  EIDSHDWDQP660
RMTARAIIDT  TLEQHDDPTH  TGNVILLHDG  GGNRARTVEA  LGPLIDSLRA  RGDTLVPLSQ720
LIGRTRDQAM  PELPGSSFLL  RAAELAAFGS  VGFLEWALYW  VMTVAVVLGV  GRLVFVLALA780
AVQRVRSHRR  GMRLDAAAAA  GHPTPGHAYA  PSVSVIVPAY  NEEKVIIKTI  ASLLRQEYAG840
PLEIVVVDDG  SPDDTYAIAS  EAYGGHGQVR  VFRKPNGGKA  SALNFGIAQA  QGDVVIGLDA900
DTVFTPHTVA  ELVAPLADPR  VGAVAGNAKV  GNRVNLVTQW  QAVEYVTSQN  LDRRAFSLLD960
CITVVPGAVG  AWRRELVIEA  GGFSDDTLAE  DQDLTLEIRR  RGHSIAYADE  AIAYTEAPDT1020
LRGLARQRFR  WSFGTLQCMW  KHRDALFGPK  YGTLGFVAMP  NVWLFQLLLS  ALGPITDLMF1080
VYALVSVKLD  QIQHGATYAL  VNLEKVLAYY  ALFLFVDWFT  AVVAFLMEPR  EDRRLTWLIV1140
IQRFAYRQVM  YWVVLRSFAA  ALRGHVVGWG  KLERKATVEV  PA1182

Predicted 3D structure by AlphaFold2 with pLDDT = 82.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPERVPVFLD  ESGLRWRRVR  LAVRAAAVAT  SIVALTVIIA  ALVLPNLGAL  SETLMPPQRA60
LGQPARFAIT  RKTRALLNAR  RKLFGALSHT  PAPPAQRPAR  IAVRPAPAFR  PIPPAAERRD120
AIVAGFYVNW  DENSRVSLEF  HKERLDWVVP  EWVFVARGGD  SLEFRLDQPP  GAAQQLFQSL180
GTVPAERRPH  VVAMLTNYDS  RAGRFSSPSW  LTRLIGTPAN  RARAVAQLRD  FVRAYRPYGV240
GGITIDLEEY  PESLDPAVIA  FAAELRAALQ  PLGAIVAQTL  ATDIDPARAG  RLAAPNDYVF300
LMLYDEHYGK  SEAGPVASQA  WYEKWARDYL  QYIPANKAIF  AMGAYGYHWS  DAPGVAASGV360
NFEAAVDSAR  SKHVAISWDS  VALNPYVTWT  DPDSTDHVMW  FLDGVTAYNQ  AKAAESMGAA420
GVGIWHLGDE  DPSLWNVLGR  HGLDGPPSRL  ADIDTLYQTQ  FVGDGELLRI  PDVPRRGRRA480
LRTDPTTGLV  TSERVTELPS  PFVVVRAGVD  TARSDGHGGL  AGRKIALTFD  DGPDGRWTPV540
ILDTLRAHGV  PATFFLIGQN  VQAHIALTRR  IYNEGHEIGN  HTFTHPNLSL  VPGFITRLQL600
DATERLLEAV  LNRRTAFFRP  PLFGDATPST  ADEQVPVAIA  TRLGFVTAGL  EIDSHDWDQP660
RMTARAIIDT  TLEQHDDPTH  TGNVILLHDG  GGNRARTVEA  LGPLIDSLRA  RGDTLVPLSQ720
LIGRTRDQAM  PELPGSSFLL  RAAELAAFGS  VGFLEWALYW  VMTVAVVLGV  GRLVFVLALA780
AVQRVRSHRR  GMRLDAAAAA  GHPTPGHAYA  PSVSVIVPAY  NEEKVIIKTI  ASLLRQEYAG840
PLEIVVVDDG  SPDDTYAIAS  EAYGGHGQVR  VFRKPNGGKA  SALNFGIAQA  QGDVVIGLDA900
DTVFTPHTVA  ELVAPLADPR  VGAVAGNAKV  GNRVNLVTQW  QAVEYVTSQN  LDRRAFSLLD960
CITVVPGAVG  AWRRELVIEA  GGFSDDTLAE  DQDLTLEIRR  RGHSIAYADE  AIAYTEAPDT1020
LRGLARQRFR  WSFGTLQCMW  KHRDALFGPK  YGTLGFVAMP  NVWLFQLLLS  ALGPITDLMF1080
VYALVSVKLD  QIQHGATYAL  VNLEKVLAYY  ALFLFVDWFT  AVVAFLMEPR  EDRRLTWLIV1140
IQRFAYRQVM  YWVVLRSFAA  ALRGHVVGWG  KLERKATVEV  PA1182

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(207-429)+CE4(521-632)+GT2(811-1034)

MPERVPVFLD  ESGLRWRRVR  LAVRAAAVAT  SIVALTVIIA  ALVLPNLGAL  SETLMPPQRA60
LGQPARFAIT  RKTRALLNAR  RKLFGALSHT  PAPPAQRPAR  IAVRPAPAFR  PIPPAAERRD120
AIVAGFYVNW  DENSRVSLEF  HKERLDWVVP  EWVFVARGGD  SLEFRLDQPP  GAAQQLFQSL180
GTVPAERRPH  VVAMLTNYDS  RAGRFSSPSW  LTRLIGTPAN  RARAVAQLRD  FVRAYRPYGV240
GGITIDLEEY  PESLDPAVIA  FAAELRAALQ  PLGAIVAQTL  ATDIDPARAG  RLAAPNDYVF300
LMLYDEHYGK  SEAGPVASQA  WYEKWARDYL  QYIPANKAIF  AMGAYGYHWS  DAPGVAASGV360
NFEAAVDSAR  SKHVAISWDS  VALNPYVTWT  DPDSTDHVMW  FLDGVTAYNQ  AKAAESMGAA420
GVGIWHLGDE  DPSLWNVLGR  HGLDGPPSRL  ADIDTLYQTQ  FVGDGELLRI  PDVPRRGRRA480
LRTDPTTGLV  TSERVTELPS  PFVVVRAGVD  TARSDGHGGL  AGRKIALTFD  DGPDGRWTPV540
ILDTLRAHGV  PATFFLIGQN  VQAHIALTRR  IYNEGHEIGN  HTFTHPNLSL  VPGFITRLQL600
DATERLLEAV  LNRRTAFFRP  PLFGDATPST  ADEQVPVAIA  TRLGFVTAGL  EIDSHDWDQP660
RMTARAIIDT  TLEQHDDPTH  TGNVILLHDG  GGNRARTVEA  LGPLIDSLRA  RGDTLVPLSQ720
LIGRTRDQAM  PELPGSSFLL  RAAELAAFGS  VGFLEWALYW  VMTVAVVLGV  GRLVFVLALA780
AVQRVRSHRR  GMRLDAAAAA  GHPTPGHAYA  PSVSVIVPAY  NEEKVIIKTI  ASLLRQEYAG840
PLEIVVVDDG  SPDDTYAIAS  EAYGGHGQVR  VFRKPNGGKA  SALNFGIAQA  QGDVVIGLDA900
DTVFTPHTVA  ELVAPLADPR  VGAVAGNAKV  GNRVNLVTQW  QAVEYVTSQN  LDRRAFSLLD960
CITVVPGAVG  AWRRELVIEA  GGFSDDTLAE  DQDLTLEIRR  RGHSIAYADE  AIAYTEAPDT1020
LRGLARQRFR  WSFGTLQCMW  KHRDALFGPK  YGTLGFVAMP  NVWLFQLLLS  ALGPITDLMF1080
VYALVSVKLD  QIQHGATYAL  VNLEKVLAYY  ALFLFVDWFT  AVVAFLMEPR  EDRRLTWLIV1140
IQRFAYRQVM  YWVVLRSFAA  ALRGHVVGWG  KLERKATVEV  PA1182

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help