CAZyme3D

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Entry ID

Information for CAZyme ID: AHG54235.1

Basic Information

GenBank IDAHG54235.1
FamilyGH28
Sequence Length358
UniProt IDA0A126CYI2(100,100)Download
Average pLDDT?77.98
CAZy50 ID127535
CAZy50 RepYes, AHG54235.1
Structure ClusterSC_GH28_clus84
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID50650
KingdomEukaryota
PhylumArthropoda
ClassInsecta
OrderHemiptera
FamilyMiridae
GenusLygus
SpeciesLygus lineolaris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRCQCGEIAL  LLLMISSGVS  WASNHVIRSI  EDVEGANKCT  NITISNLHVP  AGVSLRLLGL60
RNAVVTFEGT  ITFGFKQWSG  QLMMFKGDNV  TVIGTPGHLI  YGGGERWRDG  YRVLGGPKPK120
FFEVRLNNSK  IFGLRIRNTP  MHAISINHSS  NLTVSDIVVD  SSEGDWKGAK  RTDGFQYLRI180
KKRKPSRTAE  SPTKMTALQL  NRELTWVFEN  NYCSGGPWGF  PWVLVGGRKS  NIVERVLVRN240
NIITNSFNGV  RVKTVKNAEG  RVSNVTFEDI  TLVNITGYGV  TMVGNYILER  GVPEGEPTGG300
VPITGLRLKN  VHGSVNHDGS  NFWVWVKNAS  DWSWQTNVTG  GSRVPQCEGF  PSDMEPMC358

Predicted 3D structure by AlphaFold2 with pLDDT = 77.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MRCQCGEIAL  LLLMISSGVS  WASNHVIRSI  EDVEGANKCT  NITISNLHVP  AGVSLRLLGL60
RNAVVTFEGT  ITFGFKQWSG  QLMMFKGDNV  TVIGTPGHLI  YGGGERWRDG  YRVLGGPKPK120
FFEVRLNNSK  IFGLRIRNTP  MHAISINHSS  NLTVSDIVVD  SSEGDWKGAK  RTDGFQYLRI180
KKRKPSRTAE  SPTKMTALQL  NRELTWVFEN  NYCSGGPWGF  PWVLVGGRKS  NIVERVLVRN240
NIITNSFNGV  RVKTVKNAEG  RVSNVTFEDI  TLVNITGYGV  TMVGNYILER  GVPEGEPTGG300
VPITGLRLKN  VHGSVNHDGS  NFWVWVKNAS  DWSWQTNVTG  GSRVPQCEGF  PSDMEPMC358

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH28(35-335)

MRCQCGEIAL  LLLMISSGVS  WASNHVIRSI  EDVEGANKCT  NITISNLHVP  AGVSLRLLGL60
RNAVVTFEGT  ITFGFKQWSG  QLMMFKGDNV  TVIGTPGHLI  YGGGERWRDG  YRVLGGPKPK120
FFEVRLNNSK  IFGLRIRNTP  MHAISINHSS  NLTVSDIVVD  SSEGDWKGAK  RTDGFQYLRI180
KKRKPSRTAE  SPTKMTALQL  NRELTWVFEN  NYCSGGPWGF  PWVLVGGRKS  NIVERVLVRN240
NIITNSFNGV  RVKTVKNAEG  RVSNVTFEDI  TLVNITGYGV  TMVGNYILER  GVPEGEPTGG300
VPITGLRLKN  VHGSVNHDGS  NFWVWVKNAS  DWSWQTNVTG  GSRVPQCEGF  PSDMEPMC358

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help