CAZyme3D

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Entry ID

Information for CAZyme ID: AHF93203.1

Basic Information

GenBank IDAHF93203.1
FamilyGH50
Sequence Length846
UniProt IDW0J865(100,100)Download
Average pLDDT?82.53
CAZy50 ID23262
CAZy50 RepYes, AHF93203.1
Structure ClusterSC_GH50_clus18
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID794903
KingdomBacteria
PhylumVerrucomicrobiota
ClassOpitutae
OrderOpitutales
FamilyOpitutaceae
Genus
SpeciesOpitutaceae bacterium TAV5

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MVLFPYTRIF  LPSYSPPRFS  FLALSLALTA  TLSFSQIAAV  QEVETHAKGT  PDSGTPRSVN60
IAETHVLLDY  DAASPDASPA  PLQLSASGGA  RQEKTTPALA  RTDIARVNKI  TTKNWWLILT120
LPGTYPVEGT  TLAFDYYVPE  SSALRSFTTN  EKQPSIATRA  IRKGRWVSEE  IAFADMVGGD180
LWRLRDVRDI  KNPTLTFSAT  RSGGIEIEIA  RITITRRATM  PLPIPRVIRP  ARPDAQPVFA240
KEIEIANTDK  NAWCQIMADG  DFTLTINDRE  AGRGGYNHID  MERWPQGNRF  LPLAREIPVG300
EYLVPGKNII  RVSVSSPHTA  PELVFALGWQ  DNNERHVVIS  DATWATIPSP  ALDAATSTPC360
EDLGSLPSSD  SRRFKSPVDI  YPLLIPRPWD  TRSYLSAPLD  AFPQMEHTAD  VLRPRIIPGT420
WNIKKVGQRW  SIIDPTGAPF  FLLTTQTDYV  HPRWAYRYSR  HIYNTYKTEA  DWTAHDVDAI480
KRLGFNSLSV  SFHEEHYKHA  KTLGMSSFRF  LGASGLASPK  LRNKDGKTAR  MPDPFDPSWR540
SSFSEKLENQ  AAKWKDDSII  GVFVDNELSL  DGALHNASVV  GYVYSDAAGK  QFVGWLRERY600
RTIDDLNRAW  FGAAPDKKAA  RLSSFDDILV  KKPAPVREKS  KGLNHTQKSP  TADTPAMDRD660
FYDFAMLVVQ  EYANYVLKEV  RRIMPGKLVA  TNRFMGGATV  EVLAAWKDYD  IIGWNAYPMD720
RWDSGEYTQT  QIDRMKLAWQ  VTGKPMIISE  FGSQGLDSES  SPSPTGKLAT  QKRRGEEYGK780
VLDQILRECP  FVVGFALFSW  MDSTEGERSN  WGMVNPEGQP  YRDYLDGIVH  QHRKLNDMLP840
PLLATE846

Predicted 3D structure by AlphaFold2 with pLDDT = 82.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MVLFPYTRIF  LPSYSPPRFS  FLALSLALTA  TLSFSQIAAV  QEVETHAKGT  PDSGTPRSVN60
IAETHVLLDY  DAASPDASPA  PLQLSASGGA  RQEKTTPALA  RTDIARVNKI  TTKNWWLILT120
LPGTYPVEGT  TLAFDYYVPE  SSALRSFTTN  EKQPSIATRA  IRKGRWVSEE  IAFADMVGGD180
LWRLRDVRDI  KNPTLTFSAT  RSGGIEIEIA  RITITRRATM  PLPIPRVIRP  ARPDAQPVFA240
KEIEIANTDK  NAWCQIMADG  DFTLTINDRE  AGRGGYNHID  MERWPQGNRF  LPLAREIPVG300
EYLVPGKNII  RVSVSSPHTA  PELVFALGWQ  DNNERHVVIS  DATWATIPSP  ALDAATSTPC360
EDLGSLPSSD  SRRFKSPVDI  YPLLIPRPWD  TRSYLSAPLD  AFPQMEHTAD  VLRPRIIPGT420
WNIKKVGQRW  SIIDPTGAPF  FLLTTQTDYV  HPRWAYRYSR  HIYNTYKTEA  DWTAHDVDAI480
KRLGFNSLSV  SFHEEHYKHA  KTLGMSSFRF  LGASGLASPK  LRNKDGKTAR  MPDPFDPSWR540
SSFSEKLENQ  AAKWKDDSII  GVFVDNELSL  DGALHNASVV  GYVYSDAAGK  QFVGWLRERY600
RTIDDLNRAW  FGAAPDKKAA  RLSSFDDILV  KKPAPVREKS  KGLNHTQKSP  TADTPAMDRD660
FYDFAMLVVQ  EYANYVLKEV  RRIMPGKLVA  TNRFMGGATV  EVLAAWKDYD  IIGWNAYPMD720
RWDSGEYTQT  QIDRMKLAWQ  VTGKPMIISE  FGSQGLDSES  SPSPTGKLAT  QKRRGEEYGK780
VLDQILRECP  FVVGFALFSW  MDSTEGERSN  WGMVNPEGQP  YRDYLDGIVH  QHRKLNDMLP840
PLLATE846

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM67(232-356)+GH50(452-826)

MVLFPYTRIF  LPSYSPPRFS  FLALSLALTA  TLSFSQIAAV  QEVETHAKGT  PDSGTPRSVN60
IAETHVLLDY  DAASPDASPA  PLQLSASGGA  RQEKTTPALA  RTDIARVNKI  TTKNWWLILT120
LPGTYPVEGT  TLAFDYYVPE  SSALRSFTTN  EKQPSIATRA  IRKGRWVSEE  IAFADMVGGD180
LWRLRDVRDI  KNPTLTFSAT  RSGGIEIEIA  RITITRRATM  PLPIPRVIRP  ARPDAQPVFA240
KEIEIANTDK  NAWCQIMADG  DFTLTINDRE  AGRGGYNHID  MERWPQGNRF  LPLAREIPVG300
EYLVPGKNII  RVSVSSPHTA  PELVFALGWQ  DNNERHVVIS  DATWATIPSP  ALDAATSTPC360
EDLGSLPSSD  SRRFKSPVDI  YPLLIPRPWD  TRSYLSAPLD  AFPQMEHTAD  VLRPRIIPGT420
WNIKKVGQRW  SIIDPTGAPF  FLLTTQTDYV  HPRWAYRYSR  HIYNTYKTEA  DWTAHDVDAI480
KRLGFNSLSV  SFHEEHYKHA  KTLGMSSFRF  LGASGLASPK  LRNKDGKTAR  MPDPFDPSWR540
SSFSEKLENQ  AAKWKDDSII  GVFVDNELSL  DGALHNASVV  GYVYSDAAGK  QFVGWLRERY600
RTIDDLNRAW  FGAAPDKKAA  RLSSFDDILV  KKPAPVREKS  KGLNHTQKSP  TADTPAMDRD660
FYDFAMLVVQ  EYANYVLKEV  RRIMPGKLVA  TNRFMGGATV  EVLAAWKDYD  IIGWNAYPMD720
RWDSGEYTQT  QIDRMKLAWQ  VTGKPMIISE  FGSQGLDSES  SPSPTGKLAT  QKRRGEEYGK780
VLDQILRECP  FVVGFALFSW  MDSTEGERSN  WGMVNPEGQP  YRDYLDGIVH  QHRKLNDMLP840
PLLATE846

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help