CAZyme3D

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Entry ID

Information for CAZyme ID: AHF11716.1

Basic Information

GenBank IDAHF11716.1
FamilyCE2
Sequence Length419
UniProt IDW0ERJ4(100,100)Download
Average pLDDT?87.55
CAZy50 ID89697
CAZy50 RepYes, AHF11716.1
Structure ClusterSC_CE2_clus23
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID880074
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBarnesiellaceae
GenusBarnesiella
SpeciesBarnesiella viscericola

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLLLFFSFFL  LQQAFPAENI  DIPGDGKLSD  VNILYVGRWD  RSNPNLYHSY  WTGAYLRVDF60
TGRNIGILLQ  SGTNLVVSID  GEDLRSINAT  SGLTRLNEVE  LSDGRHSLLV  GAAGQNEELT120
FLGLSLDEGA  VTYRAQGKFL  IEYIGDSITA  TGGEDDQSAA  NYAWYTAEGL  NCDHTQIAFS180
GLALTTGYGC  LEEKIGLDSL  YFCLKNYNHI  DERPIQPWDF  SYTPNMIVIN  LGTNDKCGSA240
TDAVMKSSMF  NFLSRLRNTY  PQTTLVVMEP  FNGSYSGPIE  SAVEKCKTLG  DNNIQFVKTE300
GWLTEEDYKD  GTHPNLSGRD  KIVHNLMPYL  KPLLPSDIKN  VKKNDLSFSY  DINSHKIIVH360
SLDEIKNILL  YNSMGMLVYN  NSISSDSCEI  DLSGYMKGYY  ILRVQTSNNE  LVTYKVLKG419

Predicted 3D structure by AlphaFold2 with pLDDT = 87.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MLLLFFSFFL  LQQAFPAENI  DIPGDGKLSD  VNILYVGRWD  RSNPNLYHSY  WTGAYLRVDF60
TGRNIGILLQ  SGTNLVVSID  GEDLRSINAT  SGLTRLNEVE  LSDGRHSLLV  GAAGQNEELT120
FLGLSLDEGA  VTYRAQGKFL  IEYIGDSITA  TGGEDDQSAA  NYAWYTAEGL  NCDHTQIAFS180
GLALTTGYGC  LEEKIGLDSL  YFCLKNYNHI  DERPIQPWDF  SYTPNMIVIN  LGTNDKCGSA240
TDAVMKSSMF  NFLSRLRNTY  PQTTLVVMEP  FNGSYSGPIE  SAVEKCKTLG  DNNIQFVKTE300
GWLTEEDYKD  GTHPNLSGRD  KIVHNLMPYL  KPLLPSDIKN  VKKNDLSFSY  DINSHKIIVH360
SLDEIKNILL  YNSMGMLVYN  NSISSDSCEI  DLSGYMKGYY  ILRVQTSNNE  LVTYKVLKG419

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CE2(141-329)

MLLLFFSFFL  LQQAFPAENI  DIPGDGKLSD  VNILYVGRWD  RSNPNLYHSY  WTGAYLRVDF60
TGRNIGILLQ  SGTNLVVSID  GEDLRSINAT  SGLTRLNEVE  LSDGRHSLLV  GAAGQNEELT120
FLGLSLDEGA  VTYRAQGKFL  IEYIGDSITA  TGGEDDQSAA  NYAWYTAEGL  NCDHTQIAFS180
GLALTTGYGC  LEEKIGLDSL  YFCLKNYNHI  DERPIQPWDF  SYTPNMIVIN  LGTNDKCGSA240
TDAVMKSSMF  NFLSRLRNTY  PQTTLVVMEP  FNGSYSGPIE  SAVEKCKTLG  DNNIQFVKTE300
GWLTEEDYKD  GTHPNLSGRD  KIVHNLMPYL  KPLLPSDIKN  VKKNDLSFSY  DINSHKIIVH360
SLDEIKNILL  YNSMGMLVYN  NSISSDSCEI  DLSGYMKGYY  ILRVQTSNNE  LVTYKVLKG419

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help