Information for CAZyme ID: AHC13551.1
Basic Information
GenBank ID | AHC13551.1 |
Family | CBM35 |
Sequence Length | 752 |
UniProt ID | V5WEH1(100,100)![]() |
Average pLDDT? | 89.31 |
CAZy50 ID | 32468 |
CAZy50 Rep | Yes, AHC13551.1 |
Structure Cluster | SC_CBM35_clus159 |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 1307761 |
Kingdom | Bacteria |
Phylum | Spirochaetota |
Class | Spirochaetia |
Order | Spirochaetales |
Family | Spirochaetaceae |
Genus | Salinispira |
Species | Salinispira pacifica |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MQRTASIMIW GFVLLAAVFI TACSSPPPPP PAPRVERFER EYPVNEEFEI YPDRVVQGEK | 60 |
TATVISSEKI ESTYGTRKRT WLLQEDISSL PQFSSPEAPI YEALYNMALE ESLQDIRSDG | 120 |
SFMAGKKWNG VWTRDISYAI QLSLAYVLPE NSLTSLMAKV NEYGEIIQDT GTGGSWPIST | 180 |
DRIVWAIAAW ELYLATGDAQ WLDDAREILQ RSIQRDTLNA LDRETGLLFG ETSFLDWREQ | 240 |
TYPEWMEPKD IYESKAMSTN LLHARALEIL SYMYDEAGDS PMSMEYFRMA ERQYRLIADA | 300 |
FRLENGLYSL YLYPPIQGSR PVDKTGTLSN SLAAILAAEQ DSPAAVLGGE ISLSTEIPVV | 360 |
HFGIPTIEPQ QPGIPPYHNK GIWPFVEAYY GIAGVREGNL AAFSHSLEAM TRSAALFLSH | 420 |
MENMVYDNGH YSGTEINSER QLWSVAGYLG MVYRGLFGIN VQRDGVTFAP MLPENLGGGP | 480 |
VTLSGFTLRG MELNMTVRGT GSRIASMQID GEPADPRNIL QWRQGPVQID IVLEQSGDSG | 540 |
SINLIASDIE APKDPLIQDT GSNFSYRSLQ SDARSFLWNG RERSPMGEAG PGRQGRGDIW | 600 |
SVLSTREGEN RTLHSNLSRW TYDPDSVLRT PAGDEAVEIV PDPEQILEFS TDVEEDGRFY | 660 |
IVFEYANGSG PINTNNKTAI RTLFADEQRQ GAIILPQRGE RKWDDFGLSS GLFMNLEQGS | 720 |
HTFQLRYLPE NRNMDGEVNR ALIRSMLLIP VN | 752 |
Predicted 3D structure by AlphaFold2 with pLDDT = 89.31 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Full Sequence: CAPSIF:V and CAPSIF:G =99.9; CAPSIF:V =59.9; CAPSIF:G =40; Non-Binding=0; Download help
MQRTASIMIW GFVLLAAVFI TACSSPPPPP PAPRVERFER EYPVNEEFEI YPDRVVQGEK | 60 |
TATVISSEKI ESTYGTRKRT WLLQEDISSL PQFSSPEAPI YEALYNMALE ESLQDIRSDG | 120 |
SFMAGKKWNG VWTRDISYAI QLSLAYVLPE NSLTSLMAKV NEYGEIIQDT GTGGSWPIST | 180 |
DRIVWAIAAW ELYLATGDAQ WLDDAREILQ RSIQRDTLNA LDRETGLLFG ETSFLDWREQ | 240 |
TYPEWMEPKD IYESKAMSTN LLHARALEIL SYMYDEAGDS PMSMEYFRMA ERQYRLIADA | 300 |
FRLENGLYSL YLYPPIQGSR PVDKTGTLSN SLAAILAAEQ DSPAAVLGGE ISLSTEIPVV | 360 |
HFGIPTIEPQ QPGIPPYHNK GIWPFVEAYY GIAGVREGNL AAFSHSLEAM TRSAALFLSH | 420 |
MENMVYDNGH YSGTEINSER QLWSVAGYLG MVYRGLFGIN VQRDGVTFAP MLPENLGGGP | 480 |
VTLSGFTLRG MELNMTVRGT GSRIASMQID GEPADPRNIL QWRQGPVQID IVLEQSGDSG | 540 |
SINLIASDIE APKDPLIQDT GSNFSYRSLQ SDARSFLWNG RERSPMGEAG PGRQGRGDIW | 600 |
SVLSTREGEN RTLHSNLSRW TYDPDSVLRT PAGDEAVEIV PDPEQILEFS TDVEEDGRFY | 660 |
IVFEYANGSG PINTNNKTAI RTLFADEQRQ GAIILPQRGE RKWDDFGLSS GLFMNLEQGS | 720 |
HTFQLRYLPE NRNMDGEVNR ALIRSMLLIP VN | 752 |
Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help
Residues were colored according to prediction score:
Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder
CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).
Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.
For more detail please see CAPSIF.