CAZyme3D

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Entry ID

Information for CAZyme ID: AHC13551.1

Basic Information

GenBank IDAHC13551.1
FamilyCBM35
Sequence Length752
UniProt IDV5WEH1(100,100)Download
Average pLDDT?89.31
CAZy50 ID32468
CAZy50 RepYes, AHC13551.1
Structure ClusterSC_CBM35_clus159
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1307761
KingdomBacteria
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilySpirochaetaceae
GenusSalinispira
SpeciesSalinispira pacifica

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRTASIMIW  GFVLLAAVFI  TACSSPPPPP  PAPRVERFER  EYPVNEEFEI  YPDRVVQGEK60
TATVISSEKI  ESTYGTRKRT  WLLQEDISSL  PQFSSPEAPI  YEALYNMALE  ESLQDIRSDG120
SFMAGKKWNG  VWTRDISYAI  QLSLAYVLPE  NSLTSLMAKV  NEYGEIIQDT  GTGGSWPIST180
DRIVWAIAAW  ELYLATGDAQ  WLDDAREILQ  RSIQRDTLNA  LDRETGLLFG  ETSFLDWREQ240
TYPEWMEPKD  IYESKAMSTN  LLHARALEIL  SYMYDEAGDS  PMSMEYFRMA  ERQYRLIADA300
FRLENGLYSL  YLYPPIQGSR  PVDKTGTLSN  SLAAILAAEQ  DSPAAVLGGE  ISLSTEIPVV360
HFGIPTIEPQ  QPGIPPYHNK  GIWPFVEAYY  GIAGVREGNL  AAFSHSLEAM  TRSAALFLSH420
MENMVYDNGH  YSGTEINSER  QLWSVAGYLG  MVYRGLFGIN  VQRDGVTFAP  MLPENLGGGP480
VTLSGFTLRG  MELNMTVRGT  GSRIASMQID  GEPADPRNIL  QWRQGPVQID  IVLEQSGDSG540
SINLIASDIE  APKDPLIQDT  GSNFSYRSLQ  SDARSFLWNG  RERSPMGEAG  PGRQGRGDIW600
SVLSTREGEN  RTLHSNLSRW  TYDPDSVLRT  PAGDEAVEIV  PDPEQILEFS  TDVEEDGRFY660
IVFEYANGSG  PINTNNKTAI  RTLFADEQRQ  GAIILPQRGE  RKWDDFGLSS  GLFMNLEQGS720
HTFQLRYLPE  NRNMDGEVNR  ALIRSMLLIP  VN752

Predicted 3D structure by AlphaFold2 with pLDDT = 89.31 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MQRTASIMIW  GFVLLAAVFI  TACSSPPPPP  PAPRVERFER  EYPVNEEFEI  YPDRVVQGEK60
TATVISSEKI  ESTYGTRKRT  WLLQEDISSL  PQFSSPEAPI  YEALYNMALE  ESLQDIRSDG120
SFMAGKKWNG  VWTRDISYAI  QLSLAYVLPE  NSLTSLMAKV  NEYGEIIQDT  GTGGSWPIST180
DRIVWAIAAW  ELYLATGDAQ  WLDDAREILQ  RSIQRDTLNA  LDRETGLLFG  ETSFLDWREQ240
TYPEWMEPKD  IYESKAMSTN  LLHARALEIL  SYMYDEAGDS  PMSMEYFRMA  ERQYRLIADA300
FRLENGLYSL  YLYPPIQGSR  PVDKTGTLSN  SLAAILAAEQ  DSPAAVLGGE  ISLSTEIPVV360
HFGIPTIEPQ  QPGIPPYHNK  GIWPFVEAYY  GIAGVREGNL  AAFSHSLEAM  TRSAALFLSH420
MENMVYDNGH  YSGTEINSER  QLWSVAGYLG  MVYRGLFGIN  VQRDGVTFAP  MLPENLGGGP480
VTLSGFTLRG  MELNMTVRGT  GSRIASMQID  GEPADPRNIL  QWRQGPVQID  IVLEQSGDSG540
SINLIASDIE  APKDPLIQDT  GSNFSYRSLQ  SDARSFLWNG  RERSPMGEAG  PGRQGRGDIW600
SVLSTREGEN  RTLHSNLSRW  TYDPDSVLRT  PAGDEAVEIV  PDPEQILEFS  TDVEEDGRFY660
IVFEYANGSG  PINTNNKTAI  RTLFADEQRQ  GAIILPQRGE  RKWDDFGLSS  GLFMNLEQGS720
HTFQLRYLPE  NRNMDGEVNR  ALIRSMLLIP  VN752

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM35(640-727)

MQRTASIMIW  GFVLLAAVFI  TACSSPPPPP  PAPRVERFER  EYPVNEEFEI  YPDRVVQGEK60
TATVISSEKI  ESTYGTRKRT  WLLQEDISSL  PQFSSPEAPI  YEALYNMALE  ESLQDIRSDG120
SFMAGKKWNG  VWTRDISYAI  QLSLAYVLPE  NSLTSLMAKV  NEYGEIIQDT  GTGGSWPIST180
DRIVWAIAAW  ELYLATGDAQ  WLDDAREILQ  RSIQRDTLNA  LDRETGLLFG  ETSFLDWREQ240
TYPEWMEPKD  IYESKAMSTN  LLHARALEIL  SYMYDEAGDS  PMSMEYFRMA  ERQYRLIADA300
FRLENGLYSL  YLYPPIQGSR  PVDKTGTLSN  SLAAILAAEQ  DSPAAVLGGE  ISLSTEIPVV360
HFGIPTIEPQ  QPGIPPYHNK  GIWPFVEAYY  GIAGVREGNL  AAFSHSLEAM  TRSAALFLSH420
MENMVYDNGH  YSGTEINSER  QLWSVAGYLG  MVYRGLFGIN  VQRDGVTFAP  MLPENLGGGP480
VTLSGFTLRG  MELNMTVRGT  GSRIASMQID  GEPADPRNIL  QWRQGPVQID  IVLEQSGDSG540
SINLIASDIE  APKDPLIQDT  GSNFSYRSLQ  SDARSFLWNG  RERSPMGEAG  PGRQGRGDIW600
SVLSTREGEN  RTLHSNLSRW  TYDPDSVLRT  PAGDEAVEIV  PDPEQILEFS  TDVEEDGRFY660
IVFEYANGSG  PINTNNKTAI  RTLFADEQRQ  GAIILPQRGE  RKWDDFGLSS  GLFMNLEQGS720
HTFQLRYLPE  NRNMDGEVNR  ALIRSMLLIP  VN752

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help