CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AHB40575.1

Basic Information

GenBank IDAHB40575.1
FamilyGT2
Sequence Length271
UniProt IDK2D9W2(100,100)Download
Average pLDDT?84.72
CAZy50 ID165793
CAZy50 RepYes, AHB40575.1
Structure ClusterSC_GT2_clus738
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1394710
KingdomBacteria
Phylumcandidate division WWE3
Class
Order
Family
Genus
Speciescandidate division WWE3 bacterium RAAC2_WWE3_1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKYSVLIPTL  NEEKYIGILL  EALADQEFKD  FEVIVVDAVS  EDKTRQVVGS  FKDKLALTFV60
ESPKRGVSFQ  RNYAAKMAKA  PHLIFFDADV  APEPDFISKI  DCYIEKGNVD  VLSSWNVPIS120
DKLIDEFLYW  AFNQLYLETV  KDRFPAAVGT  FIYVKKSSFD  AVGGFQEEVK  LAEDFDLVGR180
MFKAGYKYAL  LKDPKIKFSV  RRLEKEGRVQ  FVWKNIRAAF  DYHLRGVGAL  QGKYKHEFGK240
FNLSVKEKDR  SLIKYSKKVL  QLIKKSGQTH  G271

Predicted 3D structure by AlphaFold2 with pLDDT = 84.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MKYSVLIPTL  NEEKYIGILL  EALADQEFKD  FEVIVVDAVS  EDKTRQVVGS  FKDKLALTFV60
ESPKRGVSFQ  RNYAAKMAKA  PHLIFFDADV  APEPDFISKI  DCYIEKGNVD  VLSSWNVPIS120
DKLIDEFLYW  AFNQLYLETV  KDRFPAAVGT  FIYVKKSSFD  AVGGFQEEVK  LAEDFDLVGR180
MFKAGYKYAL  LKDPKIKFSV  RRLEKEGRVQ  FVWKNIRAAF  DYHLRGVGAL  QGKYKHEFGK240
FNLSVKEKDR  SLIKYSKKVL  QLIKKSGQTH  G271

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(4-112)

MKYSVLIPTL  NEEKYIGILL  EALADQEFKD  FEVIVVDAVS  EDKTRQVVGS  FKDKLALTFV60
ESPKRGVSFQ  RNYAAKMAKA  PHLIFFDADV  APEPDFISKI  DCYIEKGNVD  VLSSWNVPIS120
DKLIDEFLYW  AFNQLYLETV  KDRFPAAVGT  FIYVKKSSFD  AVGGFQEEVK  LAEDFDLVGR180
MFKAGYKYAL  LKDPKIKFSV  RRLEKEGRVQ  FVWKNIRAAF  DYHLRGVGAL  QGKYKHEFGK240
FNLSVKEKDR  SLIKYSKKVL  QLIKKSGQTH  G271

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help