CAZyme3D

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Entry ID

Information for CAZyme ID: AHB40366.1

Basic Information

GenBank IDAHB40366.1
FamilyGT51
Sequence Length906
UniProt IDA0A656PMR8(100,100)Download
Average pLDDT?85.25
CAZy50 ID19019
CAZy50 RepYes, AHB40366.1
Structure ClusterSC_GT51_clus19
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1394710
KingdomBacteria
Phylumcandidate division WWE3
Class
Order
Family
Genus
Speciescandidate division WWE3 bacterium RAAC2_WWE3_1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPVRKTGKYR  TYKPKNNFLK  KFKLSGIFDF  SGVKAVTGFY  KKNKPDTVSL  AGLGAKKLKT60
YTVIASAVLT  LMVAGLFGTV  VVFAYFSREL  PNPTQLLERS  FELSTRFYDR  NDKLIYEVFG120
DKNRTLVKME  DVNPYVTYAT  LSTEDAEFYL  HQGYSLRGMA  RALVNTFTGE  GLQGGSTLTQ180
QVIKNTLLTQ  DRTLVRKIKE  MILSLQLENR  YSKDEIIQMY  LNETPYGGQN  YGIYSASKAY240
FNKLPKDLTV  AESAYLAGLP  QRPSYYSQFG  VNPEAGIERK  DYVLYLMRER  GWIAGDGKRH300
YLSQEDYDAA  RNEELKFETA  RVPLEAPHFV  FYAKQYLIDI  LGEDAVEKGG  LKVKTSIDLD360
LQKVAQETVT  NELEESVNLN  VWNGAMVVLD  PKTGQILAMV  GSKGYNLDAQ  PEGCISGTSG420
ENSCKFDPYV  NVAVSDRQPG  SAIKPITYAN  MLAQGYSAAY  PLLDMPISFE  GSAPDKPYIP480
ENYDGIFRGV  VPLRRALGNS  LNIPAVEALK  IGGIDNMIDL  AEKMGITTFK  DRQRYGLALT540
LGGGETKLLE  LAGAYSVFAA  GGMFHQPVPI  IEVQDSNGKV  VYKPQVQGVR  ALEEGTAFLI600
SDILSDNGAR  SDVFGTGSLL  NIPGHTVAVK  TGTTDDKRDN  YAIGYTPSVV  VGVWVGNSNN660
EKMNPYIASG  ITGASPIWNS  FVKEYLKDKT  DEKFKAPSNV  EKFEVDKLTG  GLPFEGFDTR720
NEWFIKGTEP  TAKSDWFQRL  EVCKIDGRIA  NEGCKDAGET  DEISFVRVTA  PYSEWQPAVD780
AWVKEKYKED  DRFFPPLMQS  KLEFDGDEVS  NKDDVNVEIV  GVKEGQNVPL  NFRLNVEVSA840
YNDIKIVRIY  MDGDKVAEDD  ASPYGYNFEL  DASKIGSHEF  EATVTDDDDN  KGSAKIRLNV900
VGYARQ906

Predicted 3D structure by AlphaFold2 with pLDDT = 85.25 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MPVRKTGKYR  TYKPKNNFLK  KFKLSGIFDF  SGVKAVTGFY  KKNKPDTVSL  AGLGAKKLKT60
YTVIASAVLT  LMVAGLFGTV  VVFAYFSREL  PNPTQLLERS  FELSTRFYDR  NDKLIYEVFG120
DKNRTLVKME  DVNPYVTYAT  LSTEDAEFYL  HQGYSLRGMA  RALVNTFTGE  GLQGGSTLTQ180
QVIKNTLLTQ  DRTLVRKIKE  MILSLQLENR  YSKDEIIQMY  LNETPYGGQN  YGIYSASKAY240
FNKLPKDLTV  AESAYLAGLP  QRPSYYSQFG  VNPEAGIERK  DYVLYLMRER  GWIAGDGKRH300
YLSQEDYDAA  RNEELKFETA  RVPLEAPHFV  FYAKQYLIDI  LGEDAVEKGG  LKVKTSIDLD360
LQKVAQETVT  NELEESVNLN  VWNGAMVVLD  PKTGQILAMV  GSKGYNLDAQ  PEGCISGTSG420
ENSCKFDPYV  NVAVSDRQPG  SAIKPITYAN  MLAQGYSAAY  PLLDMPISFE  GSAPDKPYIP480
ENYDGIFRGV  VPLRRALGNS  LNIPAVEALK  IGGIDNMIDL  AEKMGITTFK  DRQRYGLALT540
LGGGETKLLE  LAGAYSVFAA  GGMFHQPVPI  IEVQDSNGKV  VYKPQVQGVR  ALEEGTAFLI600
SDILSDNGAR  SDVFGTGSLL  NIPGHTVAVK  TGTTDDKRDN  YAIGYTPSVV  VGVWVGNSNN660
EKMNPYIASG  ITGASPIWNS  FVKEYLKDKT  DEKFKAPSNV  EKFEVDKLTG  GLPFEGFDTR720
NEWFIKGTEP  TAKSDWFQRL  EVCKIDGRIA  NEGCKDAGET  DEISFVRVTA  PYSEWQPAVD780
AWVKEKYKED  DRFFPPLMQS  KLEFDGDEVS  NKDDVNVEIV  GVKEGQNVPL  NFRLNVEVSA840
YNDIKIVRIY  MDGDKVAEDD  ASPYGYNFEL  DASKIGSHEF  EATVTDDDDN  KGSAKIRLNV900
VGYARQ906

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT51(114-287)

MPVRKTGKYR  TYKPKNNFLK  KFKLSGIFDF  SGVKAVTGFY  KKNKPDTVSL  AGLGAKKLKT60
YTVIASAVLT  LMVAGLFGTV  VVFAYFSREL  PNPTQLLERS  FELSTRFYDR  NDKLIYEVFG120
DKNRTLVKME  DVNPYVTYAT  LSTEDAEFYL  HQGYSLRGMA  RALVNTFTGE  GLQGGSTLTQ180
QVIKNTLLTQ  DRTLVRKIKE  MILSLQLENR  YSKDEIIQMY  LNETPYGGQN  YGIYSASKAY240
FNKLPKDLTV  AESAYLAGLP  QRPSYYSQFG  VNPEAGIERK  DYVLYLMRER  GWIAGDGKRH300
YLSQEDYDAA  RNEELKFETA  RVPLEAPHFV  FYAKQYLIDI  LGEDAVEKGG  LKVKTSIDLD360
LQKVAQETVT  NELEESVNLN  VWNGAMVVLD  PKTGQILAMV  GSKGYNLDAQ  PEGCISGTSG420
ENSCKFDPYV  NVAVSDRQPG  SAIKPITYAN  MLAQGYSAAY  PLLDMPISFE  GSAPDKPYIP480
ENYDGIFRGV  VPLRRALGNS  LNIPAVEALK  IGGIDNMIDL  AEKMGITTFK  DRQRYGLALT540
LGGGETKLLE  LAGAYSVFAA  GGMFHQPVPI  IEVQDSNGKV  VYKPQVQGVR  ALEEGTAFLI600
SDILSDNGAR  SDVFGTGSLL  NIPGHTVAVK  TGTTDDKRDN  YAIGYTPSVV  VGVWVGNSNN660
EKMNPYIASG  ITGASPIWNS  FVKEYLKDKT  DEKFKAPSNV  EKFEVDKLTG  GLPFEGFDTR720
NEWFIKGTEP  TAKSDWFQRL  EVCKIDGRIA  NEGCKDAGET  DEISFVRVTA  PYSEWQPAVD780
AWVKEKYKED  DRFFPPLMQS  KLEFDGDEVS  NKDDVNVEIV  GVKEGQNVPL  NFRLNVEVSA840
YNDIKIVRIY  MDGDKVAEDD  ASPYGYNFEL  DASKIGSHEF  EATVTDDDDN  KGSAKIRLNV900
VGYARQ906

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help