CAZyme3D

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Entry ID

Information for CAZyme ID: AHB40045.1

Basic Information

GenBank IDAHB40045.1
FamilyGT2
Sequence Length337
UniProt IDK2DAC6(100,100)Download
Average pLDDT?92.13
CAZy50 ID138400
CAZy50 RepYes, AHB40045.1
Structure ClusterSC_GT2_clus253
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1394710
KingdomBacteria
Phylumcandidate division WWE3
Class
Order
Family
Genus
Speciescandidate division WWE3 bacterium RAAC2_WWE3_1

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNRFSIIIPV  RKFNEFLKEN  ISHLKELTYR  NFEVIIVTDE  KENYDFQDSR  FILTNSGPIG60
PGEKRNLGAA  RATGDVLSFL  DDDAYPEKDW  LDRAAEIFEN  EDVFALGGPA  ITPKDARFLE120
RMSGRVLESW  MASAGTVYRH  KPGKNMEIAD  YPTVNLFVRK  DSFDRAGGFP  VEFWPGEDTK180
LCLELVKSYG  RKFVYDPRPV  VYHHRRNLFI  PHLKQISRYG  RHRGQFARIF  PETSRLPSYF240
APSMFVAGLV  LGPFISLFIP  QLLKFYIFVV  GVYLIMLVLE  SVRVFLKDKD  PRSVFYVGAG300
IFLTHVVYGV  NFIIGIMKKP  ELKLRSVDKS  SGNYLGG337

Predicted 3D structure by AlphaFold2 with pLDDT = 92.13 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MNRFSIIIPV  RKFNEFLKEN  ISHLKELTYR  NFEVIIVTDE  KENYDFQDSR  FILTNSGPIG60
PGEKRNLGAA  RATGDVLSFL  DDDAYPEKDW  LDRAAEIFEN  EDVFALGGPA  ITPKDARFLE120
RMSGRVLESW  MASAGTVYRH  KPGKNMEIAD  YPTVNLFVRK  DSFDRAGGFP  VEFWPGEDTK180
LCLELVKSYG  RKFVYDPRPV  VYHHRRNLFI  PHLKQISRYG  RHRGQFARIF  PETSRLPSYF240
APSMFVAGLV  LGPFISLFIP  QLLKFYIFVV  GVYLIMLVLE  SVRVFLKDKD  PRSVFYVGAG300
IFLTHVVYGV  NFIIGIMKKP  ELKLRSVDKS  SGNYLGG337

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT2(5-163)

MNRFSIIIPV  RKFNEFLKEN  ISHLKELTYR  NFEVIIVTDE  KENYDFQDSR  FILTNSGPIG60
PGEKRNLGAA  RATGDVLSFL  DDDAYPEKDW  LDRAAEIFEN  EDVFALGGPA  ITPKDARFLE120
RMSGRVLESW  MASAGTVYRH  KPGKNMEIAD  YPTVNLFVRK  DSFDRAGGFP  VEFWPGEDTK180
LCLELVKSYG  RKFVYDPRPV  VYHHRRNLFI  PHLKQISRYG  RHRGQFARIF  PETSRLPSYF240
APSMFVAGLV  LGPFISLFIP  QLLKFYIFVV  GVYLIMLVLE  SVRVFLKDKD  PRSVFYVGAG300
IFLTHVVYGV  NFIIGIMKKP  ELKLRSVDKS  SGNYLGG337

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help