CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: AGW14416.1

Basic Information

GenBank IDAGW14416.1
FamilyGH39
Sequence Length487
UniProt IDT2GE61(100,100)Download
Average pLDDT?86.89
CAZy50 ID71758
CAZy50 RepYes, AGW14416.1
Structure ClusterSC_GH39_clus131
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID1121448
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusMegalodesulfovibrio
SpeciesMegalodesulfovibrio gigas

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSACSGETHS  STHTRPAGAV  PVRSIQAAPA  SNQLPTLQPV  PTMPAAAAAV  VSLPWPAALA60
YLSPLVPVED  AGAQVHEARF  FQPILVQAVD  GAVPVVLGPD  PICLEAAPRE  HTPGVPPAQN120
PFGAHPASPK  DGTDFSLALD  LGLGWHRGAA  AWWVAVQSRE  DLAAGLYRFD  RMDAKLAALP180
PSMEAVVNIM  LPERRLAPDR  WEVAPGREVY  AEFIKTLVTR  YARRVRYWQF  ENEPDLGPGA240
ADLPGFAQLH  TFTAGRIRAW  QPDARLLFAG  FTGLGGEAQL  ARQLEQVAGR  VGTGDAQIFD300
LHTYGGVGGW  MRLDGLYAQL  RARLDAAGLG  RAAIWMTETG  TWTGAPGLPG  PAGPPGLAGP360
AGPMGPQSAS  VPARLPFQSE  RDQARELVKR  YVHGFFLGIE  RIFWAWGIKE  GFHDRDQMFD420
VTGLVYDGRG  EGDPGDNIPK  LGYFAYKRLI  RAMLGREGGL  IRLDLGPGVH  AYQFDREGTP480
VIIAWKE487

Predicted 3D structure by AlphaFold2 with pLDDT = 86.89 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence:
CAPSIF:V and CAPSIF:G =99.9;
CAPSIF:V =59.9;
CAPSIF:G =40;
Non-Binding=0;     Download help

MSACSGETHS  STHTRPAGAV  PVRSIQAAPA  SNQLPTLQPV  PTMPAAAAAV  VSLPWPAALA60
YLSPLVPVED  AGAQVHEARF  FQPILVQAVD  GAVPVVLGPD  PICLEAAPRE  HTPGVPPAQN120
PFGAHPASPK  DGTDFSLALD  LGLGWHRGAA  AWWVAVQSRE  DLAAGLYRFD  RMDAKLAALP180
PSMEAVVNIM  LPERRLAPDR  WEVAPGREVY  AEFIKTLVTR  YARRVRYWQF  ENEPDLGPGA240
ADLPGFAQLH  TFTAGRIRAW  QPDARLLFAG  FTGLGGEAQL  ARQLEQVAGR  VGTGDAQIFD300
LHTYGGVGGW  MRLDGLYAQL  RARLDAAGLG  RAAIWMTETG  TWTGAPGLPG  PAGPPGLAGP360
AGPMGPQSAS  VPARLPFQSE  RDQARELVKR  YVHGFFLGIE  RIFWAWGIKE  GFHDRDQMFD420
VTGLVYDGRG  EGDPGDNIPK  LGYFAYKRLI  RAMLGREGGL  IRLDLGPGVH  AYQFDREGTP480
VIIAWKE487

Carbohydrate binding residues Predicted by CAPSIF from 3D structure; Download help

Residues were colored according to prediction score:

Nonbinder, CAPSIF:G Predicted Binder, CAPSIF:V Predicted Binder, CAPSIF:V and CAPSIF:G Predicted Binder

CArbohydrate–Protein interaction Site IdentiFier (CAPSIF) that predicts non-covalent carbohydrate-binding sites on proteins: (1) a 3D-UNet voxel-based neural network model (CAPSIF:V) and (2) an equivariant graph neural network model (CAPSIF:G).

Details:
⋆B-Factor = 0.0 : Nonbinder.
⋆B-Factor = 40.0 : CAPSIF:G Predicted Binder.
⋆B-Factor = 59.9 : CAPSIF:V Predicted Binder.
⋆B-Factor = 99.9 : CAPSIF:V and CAPSIF:G Predicted Binder.

For more detail please see CAPSIF.

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) :

MSACSGETHS  STHTRPAGAV  PVRSIQAAPA  SNQLPTLQPV  PTMPAAAAAV  VSLPWPAALA60
YLSPLVPVED  AGAQVHEARF  FQPILVQAVD  GAVPVVLGPD  PICLEAAPRE  HTPGVPPAQN120
PFGAHPASPK  DGTDFSLALD  LGLGWHRGAA  AWWVAVQSRE  DLAAGLYRFD  RMDAKLAALP180
PSMEAVVNIM  LPERRLAPDR  WEVAPGREVY  AEFIKTLVTR  YARRVRYWQF  ENEPDLGPGA240
ADLPGFAQLH  TFTAGRIRAW  QPDARLLFAG  FTGLGGEAQL  ARQLEQVAGR  VGTGDAQIFD300
LHTYGGVGGW  MRLDGLYAQL  RARLDAAGLG  RAAIWMTETG  TWTGAPGLPG  PAGPPGLAGP360
AGPMGPQSAS  VPARLPFQSE  RDQARELVKR  YVHGFFLGIE  RIFWAWGIKE  GFHDRDQMFD420
VTGLVYDGRG  EGDPGDNIPK  LGYFAYKRLI  RAMLGREGGL  IRLDLGPGVH  AYQFDREGTP480
VIIAWKE487

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help